Strain Fitness in Rahnella sp. WP5 around EX31_RS07785

Experiment: Sucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS07765 and EX31_RS07770 are separated by 42 nucleotidesEX31_RS07770 and EX31_RS07775 are separated by 110 nucleotidesEX31_RS07775 and EX31_RS07780 are separated by 8 nucleotidesEX31_RS07780 and EX31_RS07785 are separated by 325 nucleotidesEX31_RS07785 and EX31_RS07790 are separated by 256 nucleotides EX31_RS07765: EX31_RS07765 - tRNA-Arg, at 34,894 to 34,970 _RS07765 EX31_RS07770: EX31_RS07770 - tRNA-Arg, at 35,013 to 35,089 _RS07770 EX31_RS07775: EX31_RS07775 - tRNA-Arg, at 35,200 to 35,276 _RS07775 EX31_RS07780: EX31_RS07780 - tRNA-Ser, at 35,285 to 35,377 _RS07780 EX31_RS07785: EX31_RS07785 - carbon storage regulator CsrA, at 35,703 to 35,888 _RS07785 EX31_RS07790: EX31_RS07790 - alanine--tRNA ligase, at 36,145 to 38,772 _RS07790 Position (kb) 35 36Strain fitness (log2 ratio) -2 -1 0 1 2at 34.721 kb on - strandat 34.750 kb on + strandat 34.751 kb on - strandat 34.751 kb on - strandat 34.751 kb on - strandat 34.751 kb on - strandat 34.751 kb on - strandat 34.751 kb on - strandat 34.751 kb on - strandat 34.751 kb on - strandat 34.760 kb on - strandat 34.760 kb on - strandat 34.760 kb on - strandat 34.760 kb on - strandat 34.813 kb on - strandat 34.824 kb on - strandat 34.824 kb on - strandat 34.824 kb on - strandat 34.824 kb on - strandat 34.824 kb on - strandat 34.824 kb on - strandat 34.860 kb on - strandat 34.860 kb on - strandat 34.860 kb on - strandat 34.860 kb on - strandat 34.860 kb on - strandat 34.862 kb on - strandat 34.862 kb on - strandat 34.862 kb on - strandat 34.888 kb on - strandat 34.888 kb on - strandat 34.888 kb on - strandat 34.888 kb on - strandat 34.888 kb on - strandat 34.893 kb on - strandat 34.893 kb on - strandat 34.893 kb on - strandat 34.944 kb on + strand, within EX31_RS07765at 34.979 kb on - strandat 34.991 kb on - strandat 34.991 kb on - strandat 35.102 kb on - strandat 35.113 kb on - strandat 35.126 kb on - strandat 35.126 kb on - strandat 35.131 kb on - strandat 35.131 kb on - strandat 35.131 kb on - strandat 35.185 kb on - strandat 35.185 kb on - strandat 35.185 kb on - strandat 35.185 kb on - strandat 35.185 kb on - strandat 35.185 kb on - strandat 35.185 kb on - strandat 35.185 kb on - strandat 35.185 kb on - strandat 35.199 kb on - strandat 35.199 kb on - strandat 35.199 kb on - strandat 35.380 kb on - strandat 35.533 kb on + strandat 35.534 kb on - strandat 35.534 kb on - strandat 35.593 kb on - strandat 35.593 kb on - strandat 35.644 kb on - strandat 35.707 kb on + strandat 35.708 kb on - strandat 35.738 kb on + strand, within EX31_RS07785at 35.739 kb on - strand, within EX31_RS07785at 35.905 kb on - strandat 35.905 kb on - strandat 35.905 kb on - strandat 35.905 kb on - strandat 35.905 kb on - strandat 35.909 kb on - strandat 35.950 kb on + strandat 35.950 kb on + strandat 35.950 kb on + strandat 35.951 kb on - strandat 35.965 kb on + strandat 35.966 kb on - strandat 35.966 kb on - strandat 35.966 kb on - strandat 35.966 kb on - strandat 35.979 kb on + strandat 35.979 kb on + strandat 35.980 kb on - strandat 35.983 kb on + strandat 35.983 kb on + strandat 35.983 kb on + strandat 35.983 kb on + strandat 35.983 kb on + strandat 35.984 kb on - strandat 35.984 kb on - strandat 35.984 kb on - strandat 35.984 kb on - strandat 35.990 kb on + strandat 35.990 kb on + strandat 35.991 kb on - strandat 36.017 kb on + strandat 36.017 kb on + strandat 36.017 kb on + strandat 36.017 kb on + strandat 36.017 kb on + strandat 36.018 kb on - strandat 36.022 kb on + strandat 36.022 kb on + strandat 36.022 kb on + strandat 36.023 kb on - strandat 36.023 kb on - strandat 36.023 kb on - strandat 36.055 kb on + strandat 36.068 kb on + strandat 36.068 kb on + strandat 36.068 kb on + strandat 36.068 kb on + strandat 36.068 kb on + strandat 36.068 kb on + strandat 36.069 kb on - strandat 36.069 kb on - strandat 36.069 kb on - strandat 36.069 kb on - strandat 36.069 kb on - strandat 36.069 kb on - strandat 36.069 kb on - strandat 36.069 kb on - strandat 36.069 kb on - strandat 36.069 kb on - strandat 36.079 kb on + strandat 36.106 kb on + strandat 36.106 kb on + strandat 36.106 kb on + strandat 36.106 kb on + strandat 36.107 kb on - strandat 36.107 kb on - strandat 36.107 kb on - strandat 36.107 kb on - strandat 36.107 kb on - strandat 36.112 kb on - strandat 36.112 kb on - strandat 36.112 kb on - strandat 36.112 kb on - strandat 36.128 kb on + strandat 36.129 kb on - strandat 36.132 kb on + strandat 36.132 kb on + strandat 36.132 kb on + strandat 36.133 kb on - strandat 36.133 kb on - strandat 36.133 kb on - strandat 36.133 kb on - strandat 36.133 kb on - strandat 36.133 kb on - strandat 36.137 kb on - strandat 36.143 kb on + strandat 36.147 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
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34,721 - +0.4
34,750 + +0.5
34,751 - +0.3
34,751 - -0.8
34,751 - -0.2
34,751 - -0.1
34,751 - +0.2
34,751 - -0.1
34,751 - -0.4
34,751 - -0.4
34,760 - +1.3
34,760 - -0.3
34,760 - +0.1
34,760 - +0.7
34,813 - +0.4
34,824 - +0.3
34,824 - +0.3
34,824 - +0.7
34,824 - +1.5
34,824 - +0.1
34,824 - -0.7
34,860 - +1.0
34,860 - +0.3
34,860 - +0.8
34,860 - +0.7
34,860 - -0.8
34,862 - +0.8
34,862 - -0.1
34,862 - -0.9
34,888 - -0.3
34,888 - -0.4
34,888 - +0.5
34,888 - +0.0
34,888 - +0.8
34,893 - -0.1
34,893 - -0.5
34,893 - +0.1
34,944 + EX31_RS07765 0.65 +2.5
34,979 - -0.8
34,991 - +0.5
34,991 - -0.5
35,102 - -0.0
35,113 - +1.3
35,126 - +0.9
35,126 - +0.8
35,131 - -0.7
35,131 - +1.0
35,131 - +0.2
35,185 - -0.1
35,185 - -1.2
35,185 - -0.5
35,185 - +0.5
35,185 - +1.5
35,185 - +0.4
35,185 - -0.9
35,185 - -0.2
35,185 - -1.0
35,199 - +0.5
35,199 - -0.1
35,199 - -0.2
35,380 - +1.5
35,533 + -0.2
35,534 - -0.2
35,534 - -0.5
35,593 - -2.6
35,593 - +0.3
35,644 - +0.3
35,707 + -0.6
35,708 - -0.7
35,738 + EX31_RS07785 0.19 -1.7
35,739 - EX31_RS07785 0.19 -0.1
35,905 - -1.2
35,905 - +0.1
35,905 - +1.1
35,905 - -0.1
35,905 - -1.0
35,909 - -0.3
35,950 + -1.6
35,950 + -0.8
35,950 + -2.6
35,951 - -0.0
35,965 + +0.9
35,966 - -1.6
35,966 - -0.2
35,966 - +0.5
35,966 - +0.5
35,979 + +0.8
35,979 + -0.1
35,980 - -1.2
35,983 + -2.4
35,983 + -0.7
35,983 + -2.5
35,983 + +0.2
35,983 + -2.3
35,984 - -1.4
35,984 - +0.3
35,984 - -0.1
35,984 - -0.8
35,990 + -1.9
35,990 + +0.1
35,991 - +0.2
36,017 + -0.9
36,017 + -0.4
36,017 + -2.1
36,017 + -2.7
36,017 + -1.0
36,018 - +2.1
36,022 + -1.8
36,022 + -2.3
36,022 + +0.8
36,023 - +0.4
36,023 - -0.2
36,023 - +0.8
36,055 + -0.4
36,068 + +0.6
36,068 + -1.5
36,068 + +0.7
36,068 + -0.7
36,068 + -1.8
36,068 + -1.5
36,069 - -0.5
36,069 - -0.0
36,069 - -1.0
36,069 - +0.2
36,069 - -0.7
36,069 - +0.7
36,069 - +2.1
36,069 - -0.2
36,069 - -0.1
36,069 - +1.0
36,079 + +0.2
36,106 + -0.1
36,106 + -0.5
36,106 + -0.5
36,106 + +1.5
36,107 - +0.0
36,107 - +0.4
36,107 - -0.0
36,107 - -0.2
36,107 - +0.3
36,112 - -2.3
36,112 - -0.2
36,112 - +0.2
36,112 - -0.2
36,128 + -0.3
36,129 - +0.0
36,132 + -1.5
36,132 + -1.2
36,132 + +1.5
36,133 - -1.3
36,133 - +0.3
36,133 - -0.5
36,133 - +0.3
36,133 - -0.0
36,133 - +0.7
36,137 - -0.3
36,143 + +2.1
36,147 - +0.7

Or see this region's nucleotide sequence