Strain Fitness in Rahnella sp. WP5 around EX31_RS07705

Experiment: Sucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS07695 and EX31_RS07700 overlap by 4 nucleotidesEX31_RS07700 and EX31_RS07705 are separated by 2 nucleotidesEX31_RS07705 and EX31_RS25245 are separated by 64 nucleotidesEX31_RS25245 and EX31_RS07710 are separated by 93 nucleotidesEX31_RS07710 and EX31_RS07715 are separated by 48 nucleotides EX31_RS07695: EX31_RS07695 - phage tail tape measure protein, at 21,754 to 23,385 _RS07695 EX31_RS07700: EX31_RS07700 - phage tail protein, at 23,382 to 23,852 _RS07700 EX31_RS07705: EX31_RS07705 - tail protein, at 23,855 to 24,955 _RS07705 EX31_RS25245: EX31_RS25245 - late control protein B, at 25,020 to 25,199 _RS25245 EX31_RS07710: EX31_RS07710 - 50S ribosomal protein L19, at 25,293 to 25,640 _RS07710 EX31_RS07715: EX31_RS07715 - tRNA (guanosine(37)-N1)-methyltransferase TrmD, at 25,689 to 26,462 _RS07715 Position (kb) 23 24 25Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 22.870 kb on - strand, within EX31_RS07695at 22.889 kb on + strand, within EX31_RS07695at 22.890 kb on - strand, within EX31_RS07695at 22.902 kb on + strand, within EX31_RS07695at 22.902 kb on + strand, within EX31_RS07695at 22.903 kb on - strand, within EX31_RS07695at 22.903 kb on - strand, within EX31_RS07695at 23.070 kb on + strand, within EX31_RS07695at 23.070 kb on + strand, within EX31_RS07695at 23.070 kb on + strand, within EX31_RS07695at 23.150 kb on + strand, within EX31_RS07695at 23.151 kb on - strand, within EX31_RS07695at 23.151 kb on - strand, within EX31_RS07695at 23.151 kb on - strand, within EX31_RS07695at 23.151 kb on - strand, within EX31_RS07695at 23.188 kb on + strand, within EX31_RS07695at 23.247 kb on - strandat 23.252 kb on + strandat 23.265 kb on + strandat 23.283 kb on + strandat 23.337 kb on + strandat 23.337 kb on + strandat 23.359 kb on + strandat 23.359 kb on + strandat 23.359 kb on + strandat 23.360 kb on - strandat 23.377 kb on + strandat 23.377 kb on + strandat 23.378 kb on - strandat 23.378 kb on - strandat 23.402 kb on - strandat 23.431 kb on - strand, within EX31_RS07700at 23.438 kb on + strand, within EX31_RS07700at 23.439 kb on - strand, within EX31_RS07700at 23.457 kb on + strand, within EX31_RS07700at 23.457 kb on + strand, within EX31_RS07700at 23.457 kb on + strand, within EX31_RS07700at 23.457 kb on + strand, within EX31_RS07700at 23.457 kb on + strand, within EX31_RS07700at 23.457 kb on + strand, within EX31_RS07700at 23.458 kb on - strand, within EX31_RS07700at 23.458 kb on - strand, within EX31_RS07700at 23.458 kb on - strand, within EX31_RS07700at 23.458 kb on - strand, within EX31_RS07700at 23.548 kb on + strand, within EX31_RS07700at 23.548 kb on + strand, within EX31_RS07700at 23.549 kb on - strand, within EX31_RS07700at 23.549 kb on - strand, within EX31_RS07700at 23.549 kb on - strand, within EX31_RS07700at 23.649 kb on + strand, within EX31_RS07700at 23.673 kb on - strand, within EX31_RS07700at 23.674 kb on + strand, within EX31_RS07700at 23.697 kb on - strand, within EX31_RS07700at 23.803 kb on + strand, within EX31_RS07700at 23.803 kb on + strand, within EX31_RS07700at 23.803 kb on + strand, within EX31_RS07700at 23.803 kb on + strand, within EX31_RS07700at 23.803 kb on + strand, within EX31_RS07700at 23.803 kb on + strand, within EX31_RS07700at 23.803 kb on + strand, within EX31_RS07700at 23.803 kb on + strand, within EX31_RS07700at 23.803 kb on + strand, within EX31_RS07700at 23.804 kb on - strand, within EX31_RS07700at 23.804 kb on - strand, within EX31_RS07700at 23.804 kb on - strand, within EX31_RS07700at 23.804 kb on - strand, within EX31_RS07700at 23.804 kb on - strand, within EX31_RS07700at 23.804 kb on - strand, within EX31_RS07700at 23.804 kb on - strand, within EX31_RS07700at 23.804 kb on - strand, within EX31_RS07700at 23.804 kb on - strand, within EX31_RS07700at 23.804 kb on - strand, within EX31_RS07700at 23.804 kb on - strand, within EX31_RS07700at 23.805 kb on + strand, within EX31_RS07700at 23.805 kb on + strand, within EX31_RS07700at 23.805 kb on + strand, within EX31_RS07700at 23.805 kb on + strand, within EX31_RS07700at 23.805 kb on + strand, within EX31_RS07700at 23.805 kb on + strand, within EX31_RS07700at 23.805 kb on + strand, within EX31_RS07700at 23.805 kb on + strand, within EX31_RS07700at 23.805 kb on + strand, within EX31_RS07700at 23.805 kb on + strand, within EX31_RS07700at 23.805 kb on + strand, within EX31_RS07700at 23.805 kb on + strand, within EX31_RS07700at 23.805 kb on + strand, within EX31_RS07700at 23.806 kb on - strandat 23.806 kb on - strandat 23.806 kb on - strandat 23.806 kb on - strandat 23.806 kb on - strandat 23.806 kb on - strandat 23.806 kb on - strandat 23.806 kb on - strandat 23.806 kb on - strandat 23.806 kb on - strandat 23.806 kb on - strandat 23.806 kb on - strandat 23.806 kb on - strandat 23.807 kb on + strandat 23.807 kb on + strandat 23.807 kb on + strandat 23.807 kb on + strandat 23.807 kb on + strandat 23.807 kb on + strandat 23.807 kb on + strandat 23.807 kb on + strandat 23.807 kb on + strandat 23.807 kb on + strandat 23.807 kb on + strandat 23.808 kb on - strandat 23.808 kb on - strandat 23.808 kb on - strandat 23.808 kb on - strandat 23.808 kb on - strandat 23.808 kb on - strandat 23.808 kb on - strandat 23.808 kb on - strandat 23.808 kb on - strandat 23.860 kb on + strandat 23.860 kb on + strandat 23.860 kb on + strandat 23.861 kb on - strandat 23.923 kb on + strandat 23.964 kb on + strandat 23.964 kb on + strandat 23.964 kb on + strandat 23.965 kb on - strand, within EX31_RS07705at 24.063 kb on + strand, within EX31_RS07705at 24.063 kb on + strand, within EX31_RS07705at 24.063 kb on + strand, within EX31_RS07705at 24.064 kb on - strand, within EX31_RS07705at 24.064 kb on - strand, within EX31_RS07705at 24.064 kb on - strand, within EX31_RS07705at 24.064 kb on - strand, within EX31_RS07705at 24.064 kb on - strand, within EX31_RS07705at 24.098 kb on + strand, within EX31_RS07705at 24.098 kb on + strand, within EX31_RS07705at 24.098 kb on + strand, within EX31_RS07705at 24.099 kb on - strand, within EX31_RS07705at 24.099 kb on - strand, within EX31_RS07705at 24.111 kb on - strand, within EX31_RS07705at 24.125 kb on - strand, within EX31_RS07705at 24.156 kb on + strand, within EX31_RS07705at 24.156 kb on + strand, within EX31_RS07705at 24.156 kb on + strand, within EX31_RS07705at 24.156 kb on + strand, within EX31_RS07705at 24.156 kb on + strand, within EX31_RS07705at 24.156 kb on + strand, within EX31_RS07705at 24.157 kb on - strand, within EX31_RS07705at 24.218 kb on + strand, within EX31_RS07705at 24.219 kb on - strand, within EX31_RS07705at 24.228 kb on - strand, within EX31_RS07705at 24.273 kb on + strand, within EX31_RS07705at 24.311 kb on - strand, within EX31_RS07705at 24.323 kb on - strand, within EX31_RS07705at 24.350 kb on + strand, within EX31_RS07705at 24.377 kb on + strand, within EX31_RS07705at 24.378 kb on - strand, within EX31_RS07705at 24.378 kb on - strand, within EX31_RS07705at 24.391 kb on - strand, within EX31_RS07705at 24.503 kb on + strand, within EX31_RS07705at 24.504 kb on - strand, within EX31_RS07705at 24.504 kb on - strand, within EX31_RS07705at 24.527 kb on + strand, within EX31_RS07705at 24.527 kb on + strand, within EX31_RS07705at 24.527 kb on + strand, within EX31_RS07705at 24.527 kb on + strand, within EX31_RS07705at 24.527 kb on + strand, within EX31_RS07705at 24.527 kb on + strand, within EX31_RS07705at 24.527 kb on + strand, within EX31_RS07705at 24.527 kb on + strand, within EX31_RS07705at 24.528 kb on - strand, within EX31_RS07705at 24.632 kb on + strand, within EX31_RS07705at 24.632 kb on + strand, within EX31_RS07705at 24.632 kb on + strand, within EX31_RS07705at 24.632 kb on + strand, within EX31_RS07705at 24.632 kb on + strand, within EX31_RS07705at 24.633 kb on - strand, within EX31_RS07705at 24.633 kb on - strand, within EX31_RS07705at 24.697 kb on + strand, within EX31_RS07705at 24.756 kb on + strand, within EX31_RS07705at 24.913 kb on + strandat 24.922 kb on + strandat 24.981 kb on + strandat 24.981 kb on + strandat 24.981 kb on + strandat 24.982 kb on - strandat 24.982 kb on - strandat 24.982 kb on - strandat 24.998 kb on - strandat 25.005 kb on - strandat 25.019 kb on + strandat 25.049 kb on - strand, within EX31_RS25245at 25.056 kb on - strand, within EX31_RS25245at 25.056 kb on - strand, within EX31_RS25245at 25.072 kb on - strand, within EX31_RS25245at 25.116 kb on - strand, within EX31_RS25245at 25.130 kb on + strand, within EX31_RS25245at 25.130 kb on + strand, within EX31_RS25245at 25.131 kb on - strand, within EX31_RS25245at 25.260 kb on - strandat 25.260 kb on - strandat 25.269 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
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22,870 - EX31_RS07695 0.68 +0.3
22,889 + EX31_RS07695 0.70 +0.7
22,890 - EX31_RS07695 0.70 +0.2
22,902 + EX31_RS07695 0.70 -1.7
22,902 + EX31_RS07695 0.70 +0.4
22,903 - EX31_RS07695 0.70 +0.2
22,903 - EX31_RS07695 0.70 -0.1
23,070 + EX31_RS07695 0.81 -0.3
23,070 + EX31_RS07695 0.81 +0.5
23,070 + EX31_RS07695 0.81 +0.5
23,150 + EX31_RS07695 0.86 -1.0
23,151 - EX31_RS07695 0.86 -0.1
23,151 - EX31_RS07695 0.86 -1.8
23,151 - EX31_RS07695 0.86 +1.8
23,151 - EX31_RS07695 0.86 +1.2
23,188 + EX31_RS07695 0.88 +0.1
23,247 - -1.2
23,252 + +1.5
23,265 + +0.0
23,283 + +0.8
23,337 + +0.3
23,337 + +0.2
23,359 + +0.4
23,359 + -0.3
23,359 + +0.2
23,360 - +1.0
23,377 + -1.4
23,377 + +0.2
23,378 - -0.3
23,378 - +1.2
23,402 - +1.1
23,431 - EX31_RS07700 0.10 +0.6
23,438 + EX31_RS07700 0.12 -0.1
23,439 - EX31_RS07700 0.12 -0.1
23,457 + EX31_RS07700 0.16 +0.4
23,457 + EX31_RS07700 0.16 -0.0
23,457 + EX31_RS07700 0.16 +0.0
23,457 + EX31_RS07700 0.16 -0.9
23,457 + EX31_RS07700 0.16 -0.3
23,457 + EX31_RS07700 0.16 -0.1
23,458 - EX31_RS07700 0.16 -0.5
23,458 - EX31_RS07700 0.16 +0.5
23,458 - EX31_RS07700 0.16 -0.7
23,458 - EX31_RS07700 0.16 -1.4
23,548 + EX31_RS07700 0.35 -2.2
23,548 + EX31_RS07700 0.35 -0.6
23,549 - EX31_RS07700 0.35 +1.7
23,549 - EX31_RS07700 0.35 +0.2
23,549 - EX31_RS07700 0.35 -2.0
23,649 + EX31_RS07700 0.57 +0.9
23,673 - EX31_RS07700 0.62 +0.6
23,674 + EX31_RS07700 0.62 +1.0
23,697 - EX31_RS07700 0.67 +0.8
23,803 + EX31_RS07700 0.89 +1.5
23,803 + EX31_RS07700 0.89 -0.6
23,803 + EX31_RS07700 0.89 -2.7
23,803 + EX31_RS07700 0.89 +0.1
23,803 + EX31_RS07700 0.89 -0.2
23,803 + EX31_RS07700 0.89 -0.3
23,803 + EX31_RS07700 0.89 +0.1
23,803 + EX31_RS07700 0.89 +0.3
23,803 + EX31_RS07700 0.89 -2.4
23,804 - EX31_RS07700 0.90 -1.3
23,804 - EX31_RS07700 0.90 -1.7
23,804 - EX31_RS07700 0.90 +0.7
23,804 - EX31_RS07700 0.90 +1.5
23,804 - EX31_RS07700 0.90 +0.7
23,804 - EX31_RS07700 0.90 +0.3
23,804 - EX31_RS07700 0.90 -0.4
23,804 - EX31_RS07700 0.90 +0.1
23,804 - EX31_RS07700 0.90 -0.9
23,804 - EX31_RS07700 0.90 +0.2
23,804 - EX31_RS07700 0.90 +1.1
23,805 + EX31_RS07700 0.90 +0.7
23,805 + EX31_RS07700 0.90 -1.2
23,805 + EX31_RS07700 0.90 -0.7
23,805 + EX31_RS07700 0.90 -0.2
23,805 + EX31_RS07700 0.90 +1.1
23,805 + EX31_RS07700 0.90 +0.7
23,805 + EX31_RS07700 0.90 +0.7
23,805 + EX31_RS07700 0.90 +0.4
23,805 + EX31_RS07700 0.90 +0.1
23,805 + EX31_RS07700 0.90 +1.3
23,805 + EX31_RS07700 0.90 +0.8
23,805 + EX31_RS07700 0.90 +0.7
23,805 + EX31_RS07700 0.90 +1.5
23,806 - +1.8
23,806 - +0.4
23,806 - +0.8
23,806 - +0.6
23,806 - -1.0
23,806 - -0.3
23,806 - +0.6
23,806 - -0.8
23,806 - +0.4
23,806 - +0.1
23,806 - +0.2
23,806 - +0.7
23,806 - +0.1
23,807 + +1.1
23,807 + +1.5
23,807 + -0.6
23,807 + -0.2
23,807 + +1.1
23,807 + +0.9
23,807 + +0.1
23,807 + -1.3
23,807 + -0.9
23,807 + +1.1
23,807 + -0.5
23,808 - +2.3
23,808 - -1.0
23,808 - -0.3
23,808 - +0.5
23,808 - -0.3
23,808 - +2.2
23,808 - -0.7
23,808 - +0.8
23,808 - -2.2
23,860 + +0.3
23,860 + -0.4
23,860 + +1.5
23,861 - +3.5
23,923 + +1.3
23,964 + -0.7
23,964 + -0.8
23,964 + -1.6
23,965 - EX31_RS07705 0.10 -0.8
24,063 + EX31_RS07705 0.19 +0.5
24,063 + EX31_RS07705 0.19 +0.3
24,063 + EX31_RS07705 0.19 -0.3
24,064 - EX31_RS07705 0.19 +0.2
24,064 - EX31_RS07705 0.19 +0.2
24,064 - EX31_RS07705 0.19 +0.9
24,064 - EX31_RS07705 0.19 -1.5
24,064 - EX31_RS07705 0.19 -0.6
24,098 + EX31_RS07705 0.22 +0.2
24,098 + EX31_RS07705 0.22 +1.0
24,098 + EX31_RS07705 0.22 +1.0
24,099 - EX31_RS07705 0.22 +0.0
24,099 - EX31_RS07705 0.22 +0.3
24,111 - EX31_RS07705 0.23 +1.5
24,125 - EX31_RS07705 0.25 +3.5
24,156 + EX31_RS07705 0.27 -0.0
24,156 + EX31_RS07705 0.27 -2.4
24,156 + EX31_RS07705 0.27 -1.8
24,156 + EX31_RS07705 0.27 +0.5
24,156 + EX31_RS07705 0.27 +0.2
24,156 + EX31_RS07705 0.27 -0.1
24,157 - EX31_RS07705 0.27 +0.2
24,218 + EX31_RS07705 0.33 -0.1
24,219 - EX31_RS07705 0.33 -1.7
24,228 - EX31_RS07705 0.34 +0.5
24,273 + EX31_RS07705 0.38 +0.5
24,311 - EX31_RS07705 0.41 -0.8
24,323 - EX31_RS07705 0.43 -0.2
24,350 + EX31_RS07705 0.45 +0.1
24,377 + EX31_RS07705 0.47 +0.8
24,378 - EX31_RS07705 0.48 +1.5
24,378 - EX31_RS07705 0.48 +1.0
24,391 - EX31_RS07705 0.49 +0.6
24,503 + EX31_RS07705 0.59 +0.3
24,504 - EX31_RS07705 0.59 -0.3
24,504 - EX31_RS07705 0.59 +0.4
24,527 + EX31_RS07705 0.61 +1.5
24,527 + EX31_RS07705 0.61 +2.2
24,527 + EX31_RS07705 0.61 +0.9
24,527 + EX31_RS07705 0.61 +0.5
24,527 + EX31_RS07705 0.61 -0.5
24,527 + EX31_RS07705 0.61 -1.2
24,527 + EX31_RS07705 0.61 -0.3
24,527 + EX31_RS07705 0.61 +0.7
24,528 - EX31_RS07705 0.61 +0.9
24,632 + EX31_RS07705 0.71 +0.0
24,632 + EX31_RS07705 0.71 -0.1
24,632 + EX31_RS07705 0.71 -0.2
24,632 + EX31_RS07705 0.71 +1.1
24,632 + EX31_RS07705 0.71 -2.0
24,633 - EX31_RS07705 0.71 -0.2
24,633 - EX31_RS07705 0.71 -0.2
24,697 + EX31_RS07705 0.76 +0.8
24,756 + EX31_RS07705 0.82 -0.2
24,913 + -0.3
24,922 + -0.1
24,981 + +0.9
24,981 + -0.1
24,981 + +0.4
24,982 - -3.1
24,982 - +0.6
24,982 - -0.5
24,998 - -0.1
25,005 - +1.5
25,019 + -0.4
25,049 - EX31_RS25245 0.16 +0.2
25,056 - EX31_RS25245 0.20 -0.5
25,056 - EX31_RS25245 0.20 -0.8
25,072 - EX31_RS25245 0.29 +1.3
25,116 - EX31_RS25245 0.53 +0.9
25,130 + EX31_RS25245 0.61 +1.1
25,130 + EX31_RS25245 0.61 +1.1
25,131 - EX31_RS25245 0.62 +1.5
25,260 - -0.7
25,260 - +0.9
25,269 - +0.7

Or see this region's nucleotide sequence