Experiment: Sucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07675 and EX31_RS07680 are separated by 14 nucleotides EX31_RS07680 and EX31_RS07685 are separated by 59 nucleotides EX31_RS07685 and EX31_RS07690 are separated by 20 nucleotides EX31_RS07690 and EX31_RS07695 overlap by 8 nucleotides
EX31_RS07675: EX31_RS07675 - phage tail sheath protein, at 19,566 to 20,735
_RS07675
EX31_RS07680: EX31_RS07680 - phage major tail tube protein, at 20,750 to 21,259
_RS07680
EX31_RS07685: EX31_RS07685 - phage tail assembly protein, at 21,319 to 21,606
_RS07685
EX31_RS07690: EX31_RS07690 - GpE family phage tail protein, at 21,627 to 21,761
_RS07690
EX31_RS07695: EX31_RS07695 - phage tail tape measure protein, at 21,754 to 23,385
_RS07695
Position (kb) 21
22 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 20.415 kb on + strand, within EX31_RS07675 at 20.423 kb on + strand, within EX31_RS07675 at 20.424 kb on - strand, within EX31_RS07675 at 20.444 kb on + strand, within EX31_RS07675 at 20.444 kb on + strand, within EX31_RS07675 at 20.444 kb on + strand, within EX31_RS07675 at 20.445 kb on - strand, within EX31_RS07675 at 20.445 kb on - strand, within EX31_RS07675 at 20.445 kb on - strand, within EX31_RS07675 at 20.477 kb on + strand, within EX31_RS07675 at 20.556 kb on + strand, within EX31_RS07675 at 20.556 kb on + strand, within EX31_RS07675 at 20.557 kb on - strand, within EX31_RS07675 at 20.581 kb on - strand, within EX31_RS07675 at 20.628 kb on + strand at 20.628 kb on + strand at 20.628 kb on + strand at 20.628 kb on + strand at 20.629 kb on - strand at 20.629 kb on - strand at 20.629 kb on - strand at 20.629 kb on - strand at 20.637 kb on + strand at 20.638 kb on - strand at 20.643 kb on + strand at 20.687 kb on + strand at 20.688 kb on - strand at 20.700 kb on + strand at 20.700 kb on + strand at 20.701 kb on - strand at 20.701 kb on - strand at 20.701 kb on - strand at 20.701 kb on - strand at 20.733 kb on + strand at 20.733 kb on + strand at 20.734 kb on - strand at 20.734 kb on - strand at 20.734 kb on - strand at 20.734 kb on - strand at 20.734 kb on - strand at 20.734 kb on - strand at 20.774 kb on + strand at 20.800 kb on + strand at 20.800 kb on + strand at 20.800 kb on + strand at 20.800 kb on + strand at 20.800 kb on + strand at 20.800 kb on + strand at 20.800 kb on + strand at 20.800 kb on + strand at 20.801 kb on - strand, within EX31_RS07680 at 20.801 kb on - strand, within EX31_RS07680 at 20.801 kb on - strand, within EX31_RS07680 at 20.804 kb on + strand, within EX31_RS07680 at 20.804 kb on + strand, within EX31_RS07680 at 20.804 kb on + strand, within EX31_RS07680 at 20.805 kb on - strand, within EX31_RS07680 at 20.805 kb on - strand, within EX31_RS07680 at 20.805 kb on - strand, within EX31_RS07680 at 20.805 kb on - strand, within EX31_RS07680 at 20.861 kb on + strand, within EX31_RS07680 at 21.095 kb on + strand, within EX31_RS07680 at 21.096 kb on - strand, within EX31_RS07680 at 21.139 kb on + strand, within EX31_RS07680 at 21.139 kb on + strand, within EX31_RS07680 at 21.139 kb on + strand, within EX31_RS07680 at 21.139 kb on + strand, within EX31_RS07680 at 21.139 kb on + strand, within EX31_RS07680 at 21.139 kb on + strand, within EX31_RS07680 at 21.140 kb on - strand, within EX31_RS07680 at 21.140 kb on - strand, within EX31_RS07680 at 21.140 kb on - strand, within EX31_RS07680 at 21.140 kb on - strand, within EX31_RS07680 at 21.140 kb on - strand, within EX31_RS07680 at 21.140 kb on - strand, within EX31_RS07680 at 21.140 kb on - strand, within EX31_RS07680 at 21.140 kb on - strand, within EX31_RS07680 at 21.140 kb on - strand, within EX31_RS07680 at 21.140 kb on - strand, within EX31_RS07680 at 21.140 kb on - strand, within EX31_RS07680 at 21.143 kb on + strand, within EX31_RS07680 at 21.143 kb on + strand, within EX31_RS07680 at 21.143 kb on + strand, within EX31_RS07680 at 21.143 kb on + strand, within EX31_RS07680 at 21.143 kb on + strand, within EX31_RS07680 at 21.143 kb on + strand, within EX31_RS07680 at 21.143 kb on + strand, within EX31_RS07680 at 21.143 kb on + strand, within EX31_RS07680 at 21.143 kb on + strand, within EX31_RS07680 at 21.144 kb on - strand, within EX31_RS07680 at 21.144 kb on - strand, within EX31_RS07680 at 21.144 kb on - strand, within EX31_RS07680 at 21.144 kb on - strand, within EX31_RS07680 at 21.144 kb on - strand, within EX31_RS07680 at 21.196 kb on + strand, within EX31_RS07680 at 21.196 kb on + strand, within EX31_RS07680 at 21.196 kb on + strand, within EX31_RS07680 at 21.196 kb on + strand, within EX31_RS07680 at 21.257 kb on + strand at 21.257 kb on + strand at 21.258 kb on - strand at 21.304 kb on + strand at 21.305 kb on - strand at 21.319 kb on - strand at 21.334 kb on - strand at 21.409 kb on - strand, within EX31_RS07685 at 21.483 kb on + strand, within EX31_RS07685 at 21.483 kb on + strand, within EX31_RS07685 at 21.567 kb on + strand, within EX31_RS07685 at 21.568 kb on - strand, within EX31_RS07685 at 21.575 kb on + strand, within EX31_RS07685 at 21.584 kb on + strand at 21.604 kb on + strand at 21.604 kb on + strand at 21.604 kb on + strand at 21.604 kb on + strand at 21.604 kb on + strand at 21.604 kb on + strand at 21.604 kb on + strand at 21.604 kb on + strand at 21.604 kb on + strand at 21.604 kb on + strand at 21.605 kb on - strand at 21.605 kb on - strand at 21.605 kb on - strand at 21.605 kb on - strand at 21.608 kb on + strand at 21.608 kb on + strand at 21.609 kb on - strand at 21.648 kb on - strand, within EX31_RS07690 at 21.658 kb on + strand, within EX31_RS07690 at 21.658 kb on + strand, within EX31_RS07690 at 21.659 kb on - strand, within EX31_RS07690 at 21.689 kb on + strand, within EX31_RS07690 at 21.689 kb on + strand, within EX31_RS07690 at 21.689 kb on + strand, within EX31_RS07690 at 21.689 kb on + strand, within EX31_RS07690 at 21.689 kb on + strand, within EX31_RS07690 at 21.690 kb on - strand, within EX31_RS07690 at 21.690 kb on - strand, within EX31_RS07690 at 21.722 kb on + strand, within EX31_RS07690 at 21.722 kb on + strand, within EX31_RS07690 at 21.722 kb on + strand, within EX31_RS07690 at 21.722 kb on + strand, within EX31_RS07690 at 21.722 kb on + strand, within EX31_RS07690 at 21.722 kb on + strand, within EX31_RS07690 at 21.723 kb on - strand, within EX31_RS07690 at 21.723 kb on - strand, within EX31_RS07690 at 21.723 kb on - strand, within EX31_RS07690 at 21.759 kb on + strand at 21.760 kb on - strand at 21.760 kb on - strand at 21.760 kb on - strand at 21.773 kb on + strand at 21.773 kb on + strand at 21.773 kb on + strand at 21.774 kb on - strand at 21.873 kb on - strand at 22.097 kb on + strand, within EX31_RS07695 at 22.104 kb on + strand, within EX31_RS07695 at 22.441 kb on - strand, within EX31_RS07695 at 22.446 kb on + strand, within EX31_RS07695 at 22.451 kb on + strand, within EX31_RS07695 at 22.451 kb on + strand, within EX31_RS07695 at 22.451 kb on + strand, within EX31_RS07695 at 22.451 kb on + strand, within EX31_RS07695 at 22.451 kb on + strand, within EX31_RS07695 at 22.451 kb on + strand, within EX31_RS07695 at 22.451 kb on + strand, within EX31_RS07695 at 22.451 kb on + strand, within EX31_RS07695 at 22.451 kb on + strand, within EX31_RS07695 at 22.451 kb on + strand, within EX31_RS07695 at 22.451 kb on + strand, within EX31_RS07695 at 22.452 kb on - strand, within EX31_RS07695 at 22.452 kb on - strand, within EX31_RS07695 at 22.452 kb on - strand, within EX31_RS07695 at 22.452 kb on - strand, within EX31_RS07695 at 22.452 kb on - strand, within EX31_RS07695 at 22.452 kb on - strand, within EX31_RS07695 at 22.452 kb on - strand, within EX31_RS07695 at 22.452 kb on - strand, within EX31_RS07695 at 22.471 kb on - strand, within EX31_RS07695 at 22.554 kb on + strand, within EX31_RS07695
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose (C) remove 20,415 + EX31_RS07675 0.73 +0.2 20,423 + EX31_RS07675 0.73 -1.1 20,424 - EX31_RS07675 0.73 -0.4 20,444 + EX31_RS07675 0.75 -0.3 20,444 + EX31_RS07675 0.75 +1.0 20,444 + EX31_RS07675 0.75 +1.0 20,445 - EX31_RS07675 0.75 -0.3 20,445 - EX31_RS07675 0.75 -1.3 20,445 - EX31_RS07675 0.75 +0.3 20,477 + EX31_RS07675 0.78 +0.9 20,556 + EX31_RS07675 0.85 -0.7 20,556 + EX31_RS07675 0.85 -0.2 20,557 - EX31_RS07675 0.85 +0.5 20,581 - EX31_RS07675 0.87 -0.7 20,628 + +2.0 20,628 + +1.1 20,628 + +0.1 20,628 + +0.4 20,629 - -0.5 20,629 - +0.4 20,629 - -2.2 20,629 - +1.3 20,637 + -1.5 20,638 - -1.5 20,643 + +0.2 20,687 + -0.3 20,688 - +1.1 20,700 + +0.3 20,700 + -1.0 20,701 - +0.1 20,701 - -1.7 20,701 - +0.2 20,701 - +0.0 20,733 + +1.2 20,733 + -0.0 20,734 - -0.9 20,734 - -1.1 20,734 - -0.2 20,734 - -1.0 20,734 - +0.1 20,734 - -0.6 20,774 + -0.3 20,800 + -0.2 20,800 + +0.4 20,800 + +0.8 20,800 + -0.9 20,800 + +0.5 20,800 + +0.6 20,800 + -0.2 20,800 + -1.1 20,801 - EX31_RS07680 0.10 +1.7 20,801 - EX31_RS07680 0.10 -1.3 20,801 - EX31_RS07680 0.10 +0.1 20,804 + EX31_RS07680 0.11 +0.2 20,804 + EX31_RS07680 0.11 -0.2 20,804 + EX31_RS07680 0.11 +0.5 20,805 - EX31_RS07680 0.11 +0.4 20,805 - EX31_RS07680 0.11 -0.8 20,805 - EX31_RS07680 0.11 +2.0 20,805 - EX31_RS07680 0.11 +1.8 20,861 + EX31_RS07680 0.22 -1.1 21,095 + EX31_RS07680 0.68 +0.5 21,096 - EX31_RS07680 0.68 -0.1 21,139 + EX31_RS07680 0.76 +0.8 21,139 + EX31_RS07680 0.76 +0.2 21,139 + EX31_RS07680 0.76 +1.7 21,139 + EX31_RS07680 0.76 +2.9 21,139 + EX31_RS07680 0.76 +2.0 21,139 + EX31_RS07680 0.76 +0.4 21,140 - EX31_RS07680 0.76 +0.0 21,140 - EX31_RS07680 0.76 +1.3 21,140 - EX31_RS07680 0.76 +0.7 21,140 - EX31_RS07680 0.76 -0.9 21,140 - EX31_RS07680 0.76 +1.0 21,140 - EX31_RS07680 0.76 +0.8 21,140 - EX31_RS07680 0.76 +0.2 21,140 - EX31_RS07680 0.76 +1.8 21,140 - EX31_RS07680 0.76 -1.7 21,140 - EX31_RS07680 0.76 +0.7 21,140 - EX31_RS07680 0.76 +0.7 21,143 + EX31_RS07680 0.77 +1.1 21,143 + EX31_RS07680 0.77 +0.2 21,143 + EX31_RS07680 0.77 +0.1 21,143 + EX31_RS07680 0.77 -0.2 21,143 + EX31_RS07680 0.77 +2.1 21,143 + EX31_RS07680 0.77 -0.4 21,143 + EX31_RS07680 0.77 +0.2 21,143 + EX31_RS07680 0.77 +1.2 21,143 + EX31_RS07680 0.77 +0.3 21,144 - EX31_RS07680 0.77 +0.5 21,144 - EX31_RS07680 0.77 +0.7 21,144 - EX31_RS07680 0.77 -0.6 21,144 - EX31_RS07680 0.77 +1.4 21,144 - EX31_RS07680 0.77 -0.0 21,196 + EX31_RS07680 0.87 +1.3 21,196 + EX31_RS07680 0.87 -0.4 21,196 + EX31_RS07680 0.87 -0.2 21,196 + EX31_RS07680 0.87 -0.8 21,257 + -0.1 21,257 + -1.2 21,258 - -1.0 21,304 + +0.3 21,305 - +1.1 21,319 - +0.7 21,334 - +0.6 21,409 - EX31_RS07685 0.31 +0.1 21,483 + EX31_RS07685 0.57 -0.5 21,483 + EX31_RS07685 0.57 +1.1 21,567 + EX31_RS07685 0.86 +1.5 21,568 - EX31_RS07685 0.86 -1.3 21,575 + EX31_RS07685 0.89 -1.3 21,584 + -0.3 21,604 + -0.2 21,604 + +1.4 21,604 + +0.2 21,604 + +1.5 21,604 + -0.8 21,604 + -0.7 21,604 + +1.2 21,604 + +0.5 21,604 + -0.3 21,604 + +0.7 21,605 - +1.2 21,605 - +0.1 21,605 - +0.3 21,605 - +0.2 21,608 + +2.1 21,608 + -0.0 21,609 - +0.5 21,648 - EX31_RS07690 0.16 +0.9 21,658 + EX31_RS07690 0.23 +0.6 21,658 + EX31_RS07690 0.23 -0.5 21,659 - EX31_RS07690 0.24 +0.2 21,689 + EX31_RS07690 0.46 +0.3 21,689 + EX31_RS07690 0.46 +1.4 21,689 + EX31_RS07690 0.46 +0.6 21,689 + EX31_RS07690 0.46 +0.3 21,689 + EX31_RS07690 0.46 -0.4 21,690 - EX31_RS07690 0.47 -0.3 21,690 - EX31_RS07690 0.47 +2.7 21,722 + EX31_RS07690 0.70 +0.0 21,722 + EX31_RS07690 0.70 +0.7 21,722 + EX31_RS07690 0.70 +0.2 21,722 + EX31_RS07690 0.70 -0.4 21,722 + EX31_RS07690 0.70 +0.5 21,722 + EX31_RS07690 0.70 -1.4 21,723 - EX31_RS07690 0.71 +1.8 21,723 - EX31_RS07690 0.71 +0.7 21,723 - EX31_RS07690 0.71 -0.0 21,759 + +0.4 21,760 - +0.2 21,760 - -0.1 21,760 - -0.5 21,773 + -0.2 21,773 + -0.6 21,773 + -0.4 21,774 - -1.0 21,873 - +0.2 22,097 + EX31_RS07695 0.21 -2.2 22,104 + EX31_RS07695 0.21 +0.2 22,441 - EX31_RS07695 0.42 +1.2 22,446 + EX31_RS07695 0.42 +2.0 22,451 + EX31_RS07695 0.43 +0.2 22,451 + EX31_RS07695 0.43 +0.5 22,451 + EX31_RS07695 0.43 +1.9 22,451 + EX31_RS07695 0.43 +1.5 22,451 + EX31_RS07695 0.43 +0.8 22,451 + EX31_RS07695 0.43 +1.9 22,451 + EX31_RS07695 0.43 +0.5 22,451 + EX31_RS07695 0.43 +0.9 22,451 + EX31_RS07695 0.43 +0.6 22,451 + EX31_RS07695 0.43 +0.1 22,451 + EX31_RS07695 0.43 -0.9 22,452 - EX31_RS07695 0.43 -0.7 22,452 - EX31_RS07695 0.43 -0.4 22,452 - EX31_RS07695 0.43 +1.3 22,452 - EX31_RS07695 0.43 +1.5 22,452 - EX31_RS07695 0.43 -0.1 22,452 - EX31_RS07695 0.43 -0.1 22,452 - EX31_RS07695 0.43 +0.7 22,452 - EX31_RS07695 0.43 +1.0 22,471 - EX31_RS07695 0.44 -1.8 22,554 + EX31_RS07695 0.49 +0.2
Or see this region's nucleotide sequence