Experiment: Sucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS05780 and EX31_RS05785 are separated by 204 nucleotides EX31_RS05785 and EX31_RS05790 are separated by 271 nucleotides
EX31_RS05780: EX31_RS05780 - formate dehydrogenase accessory sulfurtransferase FdhD, at 309,252 to 310,094
_RS05780
EX31_RS05785: EX31_RS05785 - superoxide dismutase [Mn], at 310,299 to 310,925
_RS05785
EX31_RS05790: EX31_RS05790 - HAMP domain-containing protein, at 311,197 to 313,143
_RS05790
Position (kb) 310
311 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 309.405 kb on + strand, within EX31_RS05780 at 309.405 kb on + strand, within EX31_RS05780 at 309.405 kb on + strand, within EX31_RS05780 at 309.405 kb on + strand, within EX31_RS05780 at 309.405 kb on + strand, within EX31_RS05780 at 309.405 kb on + strand, within EX31_RS05780 at 309.405 kb on + strand, within EX31_RS05780 at 309.405 kb on + strand, within EX31_RS05780 at 309.406 kb on - strand, within EX31_RS05780 at 309.406 kb on - strand, within EX31_RS05780 at 309.406 kb on - strand, within EX31_RS05780 at 309.406 kb on - strand, within EX31_RS05780 at 309.406 kb on - strand, within EX31_RS05780 at 309.406 kb on - strand, within EX31_RS05780 at 309.491 kb on + strand, within EX31_RS05780 at 309.491 kb on + strand, within EX31_RS05780 at 309.509 kb on + strand, within EX31_RS05780 at 309.509 kb on + strand, within EX31_RS05780 at 309.509 kb on + strand, within EX31_RS05780 at 309.509 kb on + strand, within EX31_RS05780 at 309.510 kb on - strand, within EX31_RS05780 at 309.510 kb on - strand, within EX31_RS05780 at 309.510 kb on - strand, within EX31_RS05780 at 309.510 kb on - strand, within EX31_RS05780 at 309.565 kb on + strand, within EX31_RS05780 at 309.566 kb on - strand, within EX31_RS05780 at 309.652 kb on + strand, within EX31_RS05780 at 309.652 kb on + strand, within EX31_RS05780 at 309.662 kb on - strand, within EX31_RS05780 at 309.773 kb on + strand, within EX31_RS05780 at 309.773 kb on + strand, within EX31_RS05780 at 309.811 kb on + strand, within EX31_RS05780 at 309.811 kb on + strand, within EX31_RS05780 at 309.812 kb on - strand, within EX31_RS05780 at 309.812 kb on - strand, within EX31_RS05780 at 309.844 kb on + strand, within EX31_RS05780 at 309.844 kb on + strand, within EX31_RS05780 at 309.844 kb on + strand, within EX31_RS05780 at 309.844 kb on + strand, within EX31_RS05780 at 309.844 kb on + strand, within EX31_RS05780 at 309.844 kb on + strand, within EX31_RS05780 at 309.845 kb on - strand, within EX31_RS05780 at 309.845 kb on - strand, within EX31_RS05780 at 309.845 kb on - strand, within EX31_RS05780 at 309.845 kb on - strand, within EX31_RS05780 at 309.845 kb on - strand, within EX31_RS05780 at 309.845 kb on - strand, within EX31_RS05780 at 309.845 kb on - strand, within EX31_RS05780 at 309.910 kb on + strand, within EX31_RS05780 at 309.910 kb on + strand, within EX31_RS05780 at 309.911 kb on - strand, within EX31_RS05780 at 309.911 kb on - strand, within EX31_RS05780 at 310.068 kb on + strand at 310.068 kb on + strand at 310.068 kb on + strand at 310.068 kb on + strand at 310.068 kb on + strand at 310.068 kb on + strand at 310.068 kb on + strand at 310.068 kb on + strand at 310.068 kb on + strand at 310.069 kb on - strand at 310.069 kb on - strand at 310.069 kb on - strand at 310.069 kb on - strand at 310.069 kb on - strand at 310.069 kb on - strand at 310.069 kb on - strand at 310.069 kb on - strand at 310.069 kb on - strand at 310.069 kb on - strand at 310.069 kb on - strand at 310.069 kb on - strand at 310.069 kb on - strand at 310.069 kb on - strand at 310.069 kb on - strand at 310.069 kb on - strand at 310.070 kb on + strand at 310.070 kb on + strand at 310.070 kb on + strand at 310.070 kb on + strand at 310.070 kb on + strand at 310.070 kb on + strand at 310.070 kb on + strand at 310.070 kb on + strand at 310.070 kb on + strand at 310.071 kb on - strand at 310.071 kb on - strand at 310.071 kb on - strand at 310.071 kb on - strand at 310.071 kb on - strand at 310.071 kb on - strand at 310.071 kb on - strand at 310.071 kb on - strand at 310.071 kb on - strand at 310.071 kb on - strand at 310.071 kb on - strand at 310.071 kb on - strand at 310.071 kb on - strand at 310.071 kb on - strand at 310.071 kb on - strand at 310.071 kb on - strand at 310.087 kb on + strand at 310.088 kb on - strand at 310.093 kb on - strand at 310.102 kb on + strand at 310.103 kb on - strand at 310.120 kb on - strand at 310.128 kb on + strand at 310.154 kb on + strand at 310.154 kb on + strand at 310.154 kb on + strand at 310.154 kb on + strand at 310.155 kb on - strand at 310.155 kb on - strand at 310.163 kb on + strand at 310.164 kb on - strand at 310.164 kb on - strand at 310.166 kb on - strand at 310.166 kb on - strand at 310.166 kb on - strand at 310.176 kb on + strand at 310.177 kb on - strand at 310.177 kb on - strand at 310.177 kb on - strand at 310.204 kb on + strand at 310.204 kb on + strand at 310.204 kb on + strand at 310.205 kb on - strand at 310.205 kb on - strand at 310.208 kb on + strand at 310.208 kb on + strand at 310.209 kb on - strand at 310.209 kb on - strand at 310.209 kb on - strand at 310.209 kb on - strand at 310.228 kb on + strand at 310.228 kb on + strand at 310.229 kb on - strand at 310.229 kb on - strand at 310.232 kb on + strand at 310.232 kb on + strand at 310.236 kb on + strand at 310.236 kb on + strand at 310.236 kb on + strand at 310.236 kb on + strand at 310.236 kb on + strand at 310.236 kb on + strand at 310.236 kb on + strand at 310.237 kb on - strand at 310.237 kb on - strand at 310.237 kb on - strand at 310.238 kb on + strand at 310.238 kb on + strand at 310.238 kb on + strand at 310.285 kb on - strand at 310.289 kb on + strand at 310.289 kb on + strand at 310.289 kb on + strand at 310.289 kb on + strand at 310.289 kb on + strand at 310.311 kb on + strand at 310.311 kb on + strand at 310.391 kb on + strand, within EX31_RS05785 at 310.392 kb on - strand, within EX31_RS05785 at 310.392 kb on - strand, within EX31_RS05785 at 310.407 kb on + strand, within EX31_RS05785 at 310.408 kb on - strand, within EX31_RS05785 at 310.733 kb on + strand, within EX31_RS05785 at 310.733 kb on + strand, within EX31_RS05785 at 310.733 kb on + strand, within EX31_RS05785 at 310.734 kb on - strand, within EX31_RS05785 at 310.824 kb on + strand, within EX31_RS05785 at 310.923 kb on + strand at 310.923 kb on + strand at 310.923 kb on + strand at 310.923 kb on + strand at 310.924 kb on - strand at 310.995 kb on + strand at 310.996 kb on - strand at 310.996 kb on - strand at 311.011 kb on - strand at 311.011 kb on - strand at 311.011 kb on - strand at 311.011 kb on - strand at 311.011 kb on - strand at 311.038 kb on + strand at 311.059 kb on + strand at 311.059 kb on + strand at 311.059 kb on + strand at 311.060 kb on - strand at 311.060 kb on - strand at 311.060 kb on - strand at 311.060 kb on - strand at 311.060 kb on - strand at 311.060 kb on - strand at 311.062 kb on + strand at 311.062 kb on + strand at 311.063 kb on - strand at 311.063 kb on - strand at 311.079 kb on - strand at 311.088 kb on + strand at 311.103 kb on - strand at 311.103 kb on - strand at 311.104 kb on + strand at 311.124 kb on - strand at 311.124 kb on - strand at 311.129 kb on + strand at 311.130 kb on - strand at 311.165 kb on + strand at 311.165 kb on + strand at 311.165 kb on + strand at 311.165 kb on + strand at 311.166 kb on - strand at 311.166 kb on - strand at 311.166 kb on - strand at 311.169 kb on + strand at 311.170 kb on - strand at 311.170 kb on - strand at 311.196 kb on + strand at 311.196 kb on + strand at 311.197 kb on - strand at 311.197 kb on - strand at 311.197 kb on - strand at 311.197 kb on - strand at 311.197 kb on - strand at 311.197 kb on - strand at 311.202 kb on + strand at 311.202 kb on + strand at 311.299 kb on - strand at 311.299 kb on - strand at 311.299 kb on - strand at 311.323 kb on - strand at 311.378 kb on + strand at 311.379 kb on - strand at 311.379 kb on - strand at 311.422 kb on + strand, within EX31_RS05790 at 311.422 kb on + strand, within EX31_RS05790 at 311.423 kb on - strand, within EX31_RS05790 at 311.423 kb on - strand, within EX31_RS05790 at 311.423 kb on - strand, within EX31_RS05790 at 311.423 kb on - strand, within EX31_RS05790 at 311.423 kb on - strand, within EX31_RS05790 at 311.423 kb on - strand, within EX31_RS05790 at 311.435 kb on - strand, within EX31_RS05790 at 311.435 kb on - strand, within EX31_RS05790 at 311.560 kb on + strand, within EX31_RS05790 at 311.560 kb on + strand, within EX31_RS05790 at 311.561 kb on - strand, within EX31_RS05790 at 311.583 kb on + strand, within EX31_RS05790 at 311.661 kb on - strand, within EX31_RS05790 at 311.661 kb on - strand, within EX31_RS05790 at 311.697 kb on + strand, within EX31_RS05790 at 311.697 kb on + strand, within EX31_RS05790 at 311.698 kb on - strand, within EX31_RS05790 at 311.698 kb on - strand, within EX31_RS05790 at 311.698 kb on - strand, within EX31_RS05790 at 311.698 kb on - strand, within EX31_RS05790 at 311.746 kb on + strand, within EX31_RS05790 at 311.817 kb on + strand, within EX31_RS05790 at 311.818 kb on - strand, within EX31_RS05790 at 311.832 kb on + strand, within EX31_RS05790 at 311.849 kb on + strand, within EX31_RS05790 at 311.850 kb on - strand, within EX31_RS05790 at 311.850 kb on - strand, within EX31_RS05790 at 311.905 kb on + strand, within EX31_RS05790 at 311.905 kb on + strand, within EX31_RS05790 at 311.905 kb on + strand, within EX31_RS05790 at 311.905 kb on + strand, within EX31_RS05790 at 311.906 kb on - strand, within EX31_RS05790 at 311.906 kb on - strand, within EX31_RS05790 at 311.906 kb on - strand, within EX31_RS05790 at 311.906 kb on - strand, within EX31_RS05790 at 311.906 kb on - strand, within EX31_RS05790 at 311.906 kb on - strand, within EX31_RS05790 at 311.906 kb on - strand, within EX31_RS05790 at 311.906 kb on - strand, within EX31_RS05790 at 311.906 kb on - strand, within EX31_RS05790 at 311.906 kb on - strand, within EX31_RS05790 at 311.907 kb on + strand, within EX31_RS05790 at 311.907 kb on + strand, within EX31_RS05790 at 311.907 kb on + strand, within EX31_RS05790 at 311.919 kb on + strand, within EX31_RS05790 at 311.919 kb on + strand, within EX31_RS05790 at 311.919 kb on + strand, within EX31_RS05790 at 311.920 kb on - strand, within EX31_RS05790 at 311.920 kb on - strand, within EX31_RS05790
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose (C) remove 309,405 + EX31_RS05780 0.18 -0.4 309,405 + EX31_RS05780 0.18 +1.1 309,405 + EX31_RS05780 0.18 +0.2 309,405 + EX31_RS05780 0.18 +0.4 309,405 + EX31_RS05780 0.18 -0.2 309,405 + EX31_RS05780 0.18 +0.1 309,405 + EX31_RS05780 0.18 -0.1 309,405 + EX31_RS05780 0.18 -0.1 309,406 - EX31_RS05780 0.18 +0.5 309,406 - EX31_RS05780 0.18 -0.5 309,406 - EX31_RS05780 0.18 -2.9 309,406 - EX31_RS05780 0.18 -0.3 309,406 - EX31_RS05780 0.18 -3.1 309,406 - EX31_RS05780 0.18 -0.7 309,491 + EX31_RS05780 0.28 +0.5 309,491 + EX31_RS05780 0.28 -1.0 309,509 + EX31_RS05780 0.30 +0.2 309,509 + EX31_RS05780 0.30 +0.2 309,509 + EX31_RS05780 0.30 -0.2 309,509 + EX31_RS05780 0.30 +0.2 309,510 - EX31_RS05780 0.31 +0.3 309,510 - EX31_RS05780 0.31 -2.1 309,510 - EX31_RS05780 0.31 +0.0 309,510 - EX31_RS05780 0.31 +1.3 309,565 + EX31_RS05780 0.37 -1.7 309,566 - EX31_RS05780 0.37 -0.9 309,652 + EX31_RS05780 0.47 +0.9 309,652 + EX31_RS05780 0.47 -0.4 309,662 - EX31_RS05780 0.49 +1.8 309,773 + EX31_RS05780 0.62 +0.7 309,773 + EX31_RS05780 0.62 +0.5 309,811 + EX31_RS05780 0.66 -0.5 309,811 + EX31_RS05780 0.66 -0.1 309,812 - EX31_RS05780 0.66 +1.3 309,812 - EX31_RS05780 0.66 +1.0 309,844 + EX31_RS05780 0.70 -0.7 309,844 + EX31_RS05780 0.70 -0.1 309,844 + EX31_RS05780 0.70 +0.5 309,844 + EX31_RS05780 0.70 +0.5 309,844 + EX31_RS05780 0.70 -2.9 309,844 + EX31_RS05780 0.70 +0.6 309,845 - EX31_RS05780 0.70 +0.1 309,845 - EX31_RS05780 0.70 +0.2 309,845 - EX31_RS05780 0.70 +0.1 309,845 - EX31_RS05780 0.70 -0.8 309,845 - EX31_RS05780 0.70 -0.2 309,845 - EX31_RS05780 0.70 -0.1 309,845 - EX31_RS05780 0.70 -1.4 309,910 + EX31_RS05780 0.78 -0.9 309,910 + EX31_RS05780 0.78 -0.1 309,911 - EX31_RS05780 0.78 -2.1 309,911 - EX31_RS05780 0.78 -0.2 310,068 + -0.5 310,068 + -0.6 310,068 + +0.5 310,068 + +2.5 310,068 + +0.3 310,068 + +0.7 310,068 + -1.2 310,068 + -0.8 310,068 + -0.3 310,069 - +0.8 310,069 - +0.9 310,069 - -0.3 310,069 - +0.3 310,069 - -0.2 310,069 - -2.3 310,069 - +0.3 310,069 - +0.4 310,069 - -0.1 310,069 - -0.2 310,069 - -1.0 310,069 - +0.0 310,069 - -2.5 310,069 - +0.2 310,069 - +0.0 310,069 - -0.8 310,070 + -0.5 310,070 + +0.4 310,070 + +1.1 310,070 + -0.7 310,070 + +0.5 310,070 + -1.1 310,070 + -1.0 310,070 + +1.6 310,070 + -1.4 310,071 - -1.0 310,071 - -1.2 310,071 - -0.1 310,071 - -1.4 310,071 - +0.2 310,071 - -0.4 310,071 - +0.4 310,071 - -0.4 310,071 - -1.0 310,071 - -0.2 310,071 - +1.0 310,071 - +0.5 310,071 - -0.4 310,071 - -2.0 310,071 - +0.5 310,071 - -0.4 310,087 + +0.6 310,088 - -1.0 310,093 - +0.2 310,102 + -0.0 310,103 - +0.4 310,120 - +0.8 310,128 + -0.3 310,154 + +0.0 310,154 + -0.7 310,154 + -1.5 310,154 + -0.6 310,155 - -0.9 310,155 - +0.9 310,163 + -0.8 310,164 - +0.0 310,164 - -2.4 310,166 - +0.5 310,166 - -0.9 310,166 - -0.1 310,176 + +0.7 310,177 - -0.0 310,177 - -1.0 310,177 - +0.1 310,204 + +0.1 310,204 + +0.5 310,204 + -0.1 310,205 - -0.3 310,205 - +1.8 310,208 + -0.1 310,208 + -0.1 310,209 - -2.5 310,209 - -0.5 310,209 - -0.4 310,209 - +0.2 310,228 + -0.0 310,228 + -0.5 310,229 - +0.8 310,229 - +0.3 310,232 + -0.5 310,232 + -0.2 310,236 + -2.0 310,236 + -0.4 310,236 + -0.0 310,236 + -0.6 310,236 + +0.7 310,236 + -0.1 310,236 + +0.3 310,237 - +1.8 310,237 - +0.1 310,237 - -0.1 310,238 + +0.0 310,238 + +0.2 310,238 + -0.4 310,285 - -2.5 310,289 + +0.6 310,289 + -1.2 310,289 + -0.4 310,289 + -0.7 310,289 + +0.2 310,311 + -1.8 310,311 + -1.5 310,391 + EX31_RS05785 0.15 -1.8 310,392 - EX31_RS05785 0.15 +0.6 310,392 - EX31_RS05785 0.15 -1.2 310,407 + EX31_RS05785 0.17 -2.8 310,408 - EX31_RS05785 0.17 -1.2 310,733 + EX31_RS05785 0.69 -1.8 310,733 + EX31_RS05785 0.69 -1.5 310,733 + EX31_RS05785 0.69 -1.4 310,734 - EX31_RS05785 0.69 -2.2 310,824 + EX31_RS05785 0.84 -0.7 310,923 + +0.2 310,923 + +0.8 310,923 + -0.4 310,923 + +0.2 310,924 - +0.1 310,995 + +0.6 310,996 - -0.9 310,996 - +0.1 311,011 - +0.3 311,011 - +0.6 311,011 - -2.5 311,011 - +1.6 311,011 - +0.2 311,038 + +0.2 311,059 + -0.4 311,059 + -0.8 311,059 + -0.1 311,060 - -1.3 311,060 - -1.0 311,060 - +0.2 311,060 - +1.7 311,060 - -0.6 311,060 - +0.9 311,062 + -1.5 311,062 + +1.0 311,063 - -0.5 311,063 - -0.3 311,079 - +0.1 311,088 + +0.4 311,103 - +0.4 311,103 - -0.2 311,104 + +0.6 311,124 - -1.2 311,124 - -0.5 311,129 + +0.5 311,130 - +0.3 311,165 + +0.5 311,165 + -0.2 311,165 + -0.3 311,165 + -0.4 311,166 - +0.7 311,166 - -0.5 311,166 - -0.4 311,169 + +0.4 311,170 - -1.1 311,170 - -0.9 311,196 + +0.6 311,196 + -1.2 311,197 - -1.6 311,197 - +0.0 311,197 - -0.6 311,197 - +0.9 311,197 - -0.7 311,197 - -2.0 311,202 + -0.4 311,202 + +1.6 311,299 - -1.0 311,299 - -2.2 311,299 - +0.2 311,323 - +1.6 311,378 + +1.0 311,379 - -0.5 311,379 - +0.8 311,422 + EX31_RS05790 0.12 +1.5 311,422 + EX31_RS05790 0.12 +0.3 311,423 - EX31_RS05790 0.12 +0.3 311,423 - EX31_RS05790 0.12 +0.6 311,423 - EX31_RS05790 0.12 -0.5 311,423 - EX31_RS05790 0.12 -0.7 311,423 - EX31_RS05790 0.12 +0.2 311,423 - EX31_RS05790 0.12 -0.1 311,435 - EX31_RS05790 0.12 +0.3 311,435 - EX31_RS05790 0.12 -0.5 311,560 + EX31_RS05790 0.19 +1.3 311,560 + EX31_RS05790 0.19 +0.1 311,561 - EX31_RS05790 0.19 +0.6 311,583 + EX31_RS05790 0.20 -1.4 311,661 - EX31_RS05790 0.24 -0.4 311,661 - EX31_RS05790 0.24 -0.1 311,697 + EX31_RS05790 0.26 +0.3 311,697 + EX31_RS05790 0.26 +0.1 311,698 - EX31_RS05790 0.26 +0.3 311,698 - EX31_RS05790 0.26 -0.5 311,698 - EX31_RS05790 0.26 +0.3 311,698 - EX31_RS05790 0.26 -1.7 311,746 + EX31_RS05790 0.28 -0.7 311,817 + EX31_RS05790 0.32 -0.5 311,818 - EX31_RS05790 0.32 +0.1 311,832 + EX31_RS05790 0.33 +0.7 311,849 + EX31_RS05790 0.33 -0.2 311,850 - EX31_RS05790 0.34 -0.3 311,850 - EX31_RS05790 0.34 -1.8 311,905 + EX31_RS05790 0.36 +0.3 311,905 + EX31_RS05790 0.36 +0.2 311,905 + EX31_RS05790 0.36 +0.8 311,905 + EX31_RS05790 0.36 +0.2 311,906 - EX31_RS05790 0.36 +0.5 311,906 - EX31_RS05790 0.36 -1.7 311,906 - EX31_RS05790 0.36 -0.7 311,906 - EX31_RS05790 0.36 -0.4 311,906 - EX31_RS05790 0.36 +1.1 311,906 - EX31_RS05790 0.36 +0.6 311,906 - EX31_RS05790 0.36 -0.5 311,906 - EX31_RS05790 0.36 +1.6 311,906 - EX31_RS05790 0.36 -1.0 311,906 - EX31_RS05790 0.36 -0.6 311,907 + EX31_RS05790 0.36 -1.0 311,907 + EX31_RS05790 0.36 +1.8 311,907 + EX31_RS05790 0.36 +1.3 311,919 + EX31_RS05790 0.37 +0.2 311,919 + EX31_RS05790 0.37 -0.7 311,919 + EX31_RS05790 0.37 -1.9 311,920 - EX31_RS05790 0.37 -1.0 311,920 - EX31_RS05790 0.37 +1.3
Or see this region's nucleotide sequence