Strain Fitness in Rahnella sp. WP5 around EX31_RS04485

Experiment: Sucrose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sucrose (C)
6,263	+		EX31_RS04475	0.52	+0.0
6,287	+		EX31_RS04475	0.55	+1.0
6,288	-		EX31_RS04475	0.55	+0.8
6,457	+		EX31_RS04475	0.75	+0.0
6,457	+		EX31_RS04475	0.75	+0.4
6,458	-		EX31_RS04475	0.75	+0.3
6,458	-		EX31_RS04475	0.75	+0.9
6,458	-		EX31_RS04475	0.75	-0.6
6,484	+		EX31_RS04475	0.78	+0.9
6,521	+		EX31_RS04475	0.82	-2.0
6,522	-		EX31_RS04475	0.82	+1.0
6,654	+				+0.4
6,655	-				-0.4
6,655	-				-0.0
6,655	-				+0.3
6,655	-				+0.8
6,655	-				+0.3
6,659	+				+0.5
6,660	-				+0.3
6,660	-				+0.7
6,713	+				+0.6
6,713	+				+0.5
6,713	+				-0.0
6,713	+				-0.5
6,713	+				-0.7
6,714	-				-0.5
6,714	-				-0.6
6,735	-				-0.5
6,735	-				-0.0
6,737	+				-0.1
6,737	+				-0.2
6,737	+				-0.6
6,737	+				+0.4
6,737	+				+1.0
6,737	+				+0.9
6,737	+				-0.6
6,737	+				-1.4
6,737	+				+0.2
6,737	+				+0.0
6,737	+				+0.8
6,737	+				-0.1
6,737	+				+0.2
6,737	+				-0.2
6,737	+				+0.5
6,737	+				+0.3
6,737	+				+0.2
6,737	+				+0.2
6,738	-				-1.1
6,738	-				+0.6
6,738	-				-1.2
6,738	-				-0.1
6,738	-				-0.6
6,738	-				+0.5
6,738	-				-1.4
6,738	-				-0.5
6,738	-				-0.7
6,738	-				-2.3
6,738	-				-0.0
6,738	-				+2.5
6,738	-				+0.0
6,738	-				-0.4
6,738	-				+0.3
6,739	+				-2.0
6,739	+				+1.5
6,739	+				-0.6
6,739	+				-2.9
6,739	+				+0.5
6,739	+				+0.0
6,739	+				+0.6
6,739	+				+0.4
6,739	+				+0.1
6,739	+				+0.0
6,739	+				+0.4
6,739	+				+0.7
6,739	+				+0.3
6,739	+				-0.1
6,740	-				-0.4
6,740	-				-0.2
6,740	-				-1.0
6,740	-				-2.3
6,740	-				-0.7
6,740	-				+0.2
6,740	-				-0.6
6,740	-				+1.0
6,740	-				-1.9
6,740	-				-0.6
6,740	-				+1.2
6,769	+				-0.2
6,769	+				+0.9
6,769	+				-0.5
6,769	+				-2.4
6,769	+				+0.3
6,769	+				+0.4
6,769	+				-0.4
6,769	+				+0.4
6,769	+				+0.6
6,769	+				+1.6
6,769	+				+0.9
6,769	+				+0.8
6,769	+				+0.5
6,770	-				+0.1
6,770	-				+0.5
6,770	-				+0.9
6,770	-				-0.2
6,770	-				+0.0
6,770	-				-0.2
6,770	-				+2.2
6,771	+				+0.7
6,771	+				+1.4
6,771	+				+0.2
6,772	-				+0.5
6,772	-				-0.0
6,772	-				-0.3
6,782	-				+0.0
6,789	+				+1.6
6,790	-				+0.5
6,790	-				-0.4
6,804	+				-1.3
6,804	+				-0.0
6,804	+				+0.9
6,805	-				-0.8
6,812	+				+1.1
6,812	+				-0.3
6,812	+				-1.1
6,812	+				-0.5
6,812	+				+0.6
6,835	+				+1.0
6,835	+				-1.3
6,837	+				-0.1
6,837	+				+0.0
6,837	+				-0.4
6,837	+				+0.3
6,837	+				+0.3
6,837	+				+0.2
6,837	+				+0.7
6,837	+				-0.9
6,837	+				+0.0
6,837	+				+0.3
6,837	+				-0.6
6,837	+				+0.0
6,838	-				+0.3
6,838	-				-0.2
6,838	-				+0.0
6,839	-				+0.5
6,864	+				-0.6
6,865	-				-0.2
6,865	-				-0.6
6,865	-				+0.5
6,885	-				-2.0
6,898	+				+1.0
6,898	+				-0.4
6,898	+				+0.6
6,899	-				-0.4
6,899	-				+0.2
6,899	-				-1.7
6,899	-				+0.2
6,903	+				+0.9
6,903	+				+0.2
6,904	-				-1.7
6,904	-				-1.7
6,950	+				+0.7
6,950	+				-0.4
6,950	+				-0.3
6,950	+				+0.4
6,951	-				-1.0
6,960	+				-0.2
6,960	+				+0.3
6,960	+				+0.4
6,961	-				+1.4
6,961	-				+0.0
6,961	-				+0.8
6,961	-				-0.2
6,979	+				-1.1
6,979	+				-0.3
6,979	+				+0.9
6,979	+				-0.9
7,033	+		EX31_RS04480	0.30	+0.1
7,033	+		EX31_RS04480	0.30	+0.0
7,033	+		EX31_RS04480	0.30	+0.1
7,033	+		EX31_RS04480	0.30	+0.3
7,034	-		EX31_RS04480	0.30	+0.3
7,034	-		EX31_RS04480	0.30	-0.2
7,034	-		EX31_RS04480	0.30	-0.4
7,146	+		EX31_RS04480	0.81	-1.7
7,181	+				+0.5
7,182	-				+1.0
7,234	+				-0.4
7,234	+				-0.6
7,234	+				+1.0
7,235	-				+0.7
7,235	-				-0.4
7,235	-				-0.8
7,235	-				+0.5
7,235	-				-0.2
7,236	+				-1.0
7,236	+				+1.3
7,236	+				+0.7
7,237	-				+1.3
7,237	-				+2.0
7,237	-				+1.2
7,297	+				-1.7
7,298	-				+0.3
7,618	+		EX31_RS04485	0.60	-0.5
7,619	-		EX31_RS04485	0.60	-0.9
7,619	-		EX31_RS04485	0.60	-0.1
7,647	+		EX31_RS04485	0.65	+1.3
7,647	+		EX31_RS04485	0.65	-1.6
7,647	+		EX31_RS04485	0.65	-1.9
7,647	+		EX31_RS04485	0.65	+0.1
7,647	+		EX31_RS04485	0.65	+1.2
7,647	+		EX31_RS04485	0.65	-0.4
7,648	-		EX31_RS04485	0.65	+0.0
7,648	-		EX31_RS04485	0.65	-0.1
7,657	-		EX31_RS04485	0.67	+0.2
7,679	+		EX31_RS04485	0.70	+0.2
7,679	+		EX31_RS04485	0.70	+0.6
7,679	+		EX31_RS04485	0.70	-0.5
7,680	-		EX31_RS04485	0.70	-1.2
7,680	-		EX31_RS04485	0.70	-1.5
7,680	-		EX31_RS04485	0.70	-0.2
7,680	-		EX31_RS04485	0.70	-2.5
7,680	-		EX31_RS04485	0.70	-0.6
7,680	-		EX31_RS04485	0.70	-0.4
7,680	-		EX31_RS04485	0.70	+0.6
7,680	-		EX31_RS04485	0.70	-0.7
7,680	-		EX31_RS04485	0.70	+0.4
7,680	-		EX31_RS04485	0.70	-0.5
7,680	-		EX31_RS04485	0.70	-0.8
7,680	-		EX31_RS04485	0.70	-0.9
7,680	-		EX31_RS04485	0.70	+0.8
7,680	-		EX31_RS04485	0.70	-0.1
7,688	+		EX31_RS04485	0.72	-0.7
7,688	+		EX31_RS04485	0.72	-0.7
7,688	+		EX31_RS04485	0.72	-1.2
7,688	+		EX31_RS04485	0.72	-1.0
7,688	+		EX31_RS04485	0.72	+0.3
7,688	+		EX31_RS04485	0.72	+0.9
7,688	+		EX31_RS04485	0.72	+0.0
7,688	+		EX31_RS04485	0.72	+0.7
7,689	-		EX31_RS04485	0.72	+0.4
7,689	-		EX31_RS04485	0.72	-1.9
7,759	-		EX31_RS04485	0.83	-1.0
7,759	-		EX31_RS04485	0.83	-0.9
7,810	+				-2.5
7,810	+				-2.2
7,810	+				-0.6
7,810	+				+0.0
7,811	-				-0.7
7,811	-				+0.2
7,814	+				+1.9
7,814	+				+0.5
7,814	+				-0.3
7,815	-				-1.5
7,815	-				+0.2
7,815	-				-0.9
7,821	+				-1.1
7,821	+				+0.0
7,850	+				-1.4
7,861	+				-0.6
7,861	+				-0.5
7,862	-				+0.5
7,862	-				+0.6
7,862	-				+1.1
7,862	-				-0.0
7,868	+				-0.6
7,869	-				-0.5
7,869	-				+0.3
7,907	+				+0.3
7,907	+				-2.0
7,907	+				+0.0
7,908	-				-0.4
7,908	-				+0.3
7,932	+				-0.5
7,932	+				+1.9
7,933	-				-0.1
7,933	-				-0.8
7,933	-				+1.9
7,986	-				+1.6
8,003	+				+0.0
8,003	+				+0.3
8,004	-				-0.5
8,024	+				-0.6
8,024	+				-0.5
8,024	+				-0.4
8,025	-				-0.3
8,027	+				-0.0
8,027	+				+1.2
8,027	+				-0.2
8,027	+				+0.8
8,028	-				+0.6
8,028	-				+0.0
8,052	+				+0.4
8,053	-				-0.6
8,058	+				+1.1
8,059	-				+0.7
8,059	-				+0.8
8,059	-				-0.1
8,059	-				-1.6
8,075	-				+1.2
8,075	-				-0.5
8,075	-				-0.8
8,075	-				+0.2
8,186	+		EX31_RS04490	0.63	+0.0
8,187	-		EX31_RS04490	0.64	-2.6
8,197	+		EX31_RS04490	0.69	+0.3
8,197	+		EX31_RS04490	0.69	+0.0
8,197	+		EX31_RS04490	0.69	+0.3
8,197	+		EX31_RS04490	0.69	+1.5
8,197	+		EX31_RS04490	0.69	+0.4
8,198	-		EX31_RS04490	0.69	+0.5
8,198	-		EX31_RS04490	0.69	-0.6
8,209	+		EX31_RS04490	0.75	+0.7
8,209	+		EX31_RS04490	0.75	-0.5
8,209	+		EX31_RS04490	0.75	-0.6
8,209	+		EX31_RS04490	0.75	+0.7
8,210	-		EX31_RS04490	0.75	+0.6
8,210	-		EX31_RS04490	0.75	-0.3
8,210	-		EX31_RS04490	0.75	+1.6
8,210	-		EX31_RS04490	0.75	+0.5
8,210	-		EX31_RS04490	0.75	+0.4
8,254	+				-0.7
8,254	+				+0.7
8,254	+				+0.5
8,255	-				+1.9
8,255	-				+1.0
8,255	-				+0.7
8,255	-				+0.2
8,263	+				+0.3
8,263	+				+0.0
8,263	+				+2.9
8,263	+				-0.5
8,263	+				+0.8
8,263	+				-0.1
8,263	+				-0.2
8,263	+				-0.4
8,264	-				-0.4
8,264	-				-0.4
8,264	-				+0.4
8,264	-				-0.1
8,264	-				+0.6
8,264	-				-0.4
8,264	-				+1.1
8,264	-				+0.1
8,264	-				+0.5
8,264	-				-0.3
8,264	-				+1.8
8,264	-				+0.1
8,264	-				+0.3
8,264	-				-0.3
8,264	-				-1.0
8,264	-				+0.7
8,381	-				-0.6
8,524	-		EX31_RS04495	0.10	+1.0
8,584	+		EX31_RS04495	0.14	-0.2
8,613	-		EX31_RS04495	0.15	+0.9
8,696	+		EX31_RS04495	0.20	-0.9
8,697	-		EX31_RS04495	0.20	+0.2
8,697	-		EX31_RS04495	0.20	-0.7
8,697	-		EX31_RS04495	0.20	-0.2
8,697	-		EX31_RS04495	0.20	-0.7
8,697	-		EX31_RS04495	0.20	+0.5
8,716	+		EX31_RS04495	0.21	-0.2
8,716	+		EX31_RS04495	0.21	+0.2
8,716	+		EX31_RS04495	0.21	-0.1
8,716	+		EX31_RS04495	0.21	-0.2
8,716	+		EX31_RS04495	0.21	-0.2
8,716	+		EX31_RS04495	0.21	-2.4
8,717	-		EX31_RS04495	0.21	+1.2
8,717	-		EX31_RS04495	0.21	+0.2
8,717	-		EX31_RS04495	0.21	+0.3
8,717	-		EX31_RS04495	0.21	+0.0
8,737	+		EX31_RS04495	0.22	-0.9
8,737	+		EX31_RS04495	0.22	+0.8
8,737	+		EX31_RS04495	0.22	-1.0
8,737	+		EX31_RS04495	0.22	+0.3
8,738	-		EX31_RS04495	0.22	-1.4
8,738	-		EX31_RS04495	0.22	-0.5
8,738	-		EX31_RS04495	0.22	+1.1
8,740	+		EX31_RS04495	0.22	+0.4
8,740	+		EX31_RS04495	0.22	+1.4
8,740	+		EX31_RS04495	0.22	-0.5
8,741	-		EX31_RS04495	0.22	-0.7
8,741	-		EX31_RS04495	0.22	-2.6
8,780	+		EX31_RS04495	0.24	-0.2
8,780	+		EX31_RS04495	0.24	-0.2
8,780	+		EX31_RS04495	0.24	+1.0
8,805	+		EX31_RS04495	0.26	+0.3
8,805	+		EX31_RS04495	0.26	-1.0
8,806	-		EX31_RS04495	0.26	+0.5
8,808	+		EX31_RS04495	0.26	-2.0
8,808	+		EX31_RS04495	0.26	-0.2
8,808	+		EX31_RS04495	0.26	-0.7
8,808	+		EX31_RS04495	0.26	+0.6
8,808	+		EX31_RS04495	0.26	-0.7
8,809	-		EX31_RS04495	0.26	+0.5
8,809	-		EX31_RS04495	0.26	+0.4
8,818	-		EX31_RS04495	0.26	+0.4
8,824	-		EX31_RS04495	0.27	-0.5