Strain Fitness in Rahnella sp. WP5 around EX31_RS02995

Experiment: Sucrose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS02990 and EX31_RS02995 are separated by 63 nucleotidesEX31_RS02995 and EX31_RS03000 are separated by 105 nucleotidesEX31_RS03000 and EX31_RS03005 overlap by 11 nucleotides EX31_RS02990: EX31_RS02990 - acyltransferase family protein, at 82,103 to 83,068 _RS02990 EX31_RS02995: EX31_RS02995 - hypothetical protein, at 83,132 to 83,386 _RS02995 EX31_RS03000: EX31_RS03000 - hypothetical protein, at 83,492 to 83,746 _RS03000 EX31_RS03005: EX31_RS03005 - hypothetical protein, at 83,736 to 84,392 _RS03005 Position (kb) 83 84Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 82.174 kb on + strandat 82.174 kb on + strandat 82.175 kb on - strandat 82.182 kb on - strandat 82.182 kb on - strandat 82.191 kb on - strandat 82.191 kb on - strandat 82.191 kb on - strandat 82.197 kb on - strandat 82.197 kb on - strandat 82.197 kb on - strandat 82.197 kb on - strandat 82.199 kb on - strandat 82.199 kb on - strandat 82.202 kb on + strand, within EX31_RS02990at 82.202 kb on + strand, within EX31_RS02990at 82.202 kb on + strand, within EX31_RS02990at 82.203 kb on - strand, within EX31_RS02990at 82.203 kb on - strand, within EX31_RS02990at 82.203 kb on - strand, within EX31_RS02990at 82.210 kb on + strand, within EX31_RS02990at 82.232 kb on - strand, within EX31_RS02990at 82.232 kb on - strand, within EX31_RS02990at 82.276 kb on + strand, within EX31_RS02990at 82.276 kb on + strand, within EX31_RS02990at 82.276 kb on + strand, within EX31_RS02990at 82.276 kb on + strand, within EX31_RS02990at 82.276 kb on + strand, within EX31_RS02990at 82.276 kb on + strand, within EX31_RS02990at 82.276 kb on + strand, within EX31_RS02990at 82.277 kb on - strand, within EX31_RS02990at 82.277 kb on - strand, within EX31_RS02990at 82.277 kb on - strand, within EX31_RS02990at 82.335 kb on + strand, within EX31_RS02990at 82.367 kb on + strand, within EX31_RS02990at 82.367 kb on + strand, within EX31_RS02990at 82.367 kb on + strand, within EX31_RS02990at 82.368 kb on - strand, within EX31_RS02990at 82.368 kb on - strand, within EX31_RS02990at 82.414 kb on + strand, within EX31_RS02990at 82.414 kb on + strand, within EX31_RS02990at 82.421 kb on - strand, within EX31_RS02990at 82.432 kb on + strand, within EX31_RS02990at 82.433 kb on - strand, within EX31_RS02990at 82.436 kb on + strand, within EX31_RS02990at 82.437 kb on - strand, within EX31_RS02990at 82.437 kb on - strand, within EX31_RS02990at 82.526 kb on + strand, within EX31_RS02990at 82.526 kb on + strand, within EX31_RS02990at 82.544 kb on + strand, within EX31_RS02990at 82.545 kb on - strand, within EX31_RS02990at 82.545 kb on - strand, within EX31_RS02990at 82.558 kb on + strand, within EX31_RS02990at 82.559 kb on - strand, within EX31_RS02990at 82.559 kb on - strand, within EX31_RS02990at 82.559 kb on - strand, within EX31_RS02990at 82.602 kb on + strand, within EX31_RS02990at 82.603 kb on - strand, within EX31_RS02990at 82.607 kb on + strand, within EX31_RS02990at 82.608 kb on - strand, within EX31_RS02990at 82.610 kb on + strand, within EX31_RS02990at 82.610 kb on + strand, within EX31_RS02990at 82.610 kb on + strand, within EX31_RS02990at 82.630 kb on - strand, within EX31_RS02990at 82.630 kb on - strand, within EX31_RS02990at 82.630 kb on - strand, within EX31_RS02990at 82.631 kb on + strand, within EX31_RS02990at 82.631 kb on + strand, within EX31_RS02990at 82.631 kb on + strand, within EX31_RS02990at 82.631 kb on + strand, within EX31_RS02990at 82.632 kb on - strand, within EX31_RS02990at 82.656 kb on - strand, within EX31_RS02990at 82.775 kb on - strand, within EX31_RS02990at 82.796 kb on + strand, within EX31_RS02990at 82.796 kb on + strand, within EX31_RS02990at 82.796 kb on + strand, within EX31_RS02990at 82.796 kb on + strand, within EX31_RS02990at 82.796 kb on + strand, within EX31_RS02990at 82.797 kb on - strand, within EX31_RS02990at 82.797 kb on - strand, within EX31_RS02990at 82.797 kb on - strand, within EX31_RS02990at 82.797 kb on - strand, within EX31_RS02990at 82.797 kb on - strand, within EX31_RS02990at 82.797 kb on - strand, within EX31_RS02990at 82.797 kb on - strand, within EX31_RS02990at 82.797 kb on - strand, within EX31_RS02990at 82.797 kb on - strand, within EX31_RS02990at 82.798 kb on + strand, within EX31_RS02990at 82.799 kb on - strand, within EX31_RS02990at 82.799 kb on - strand, within EX31_RS02990at 82.799 kb on - strand, within EX31_RS02990at 82.809 kb on + strand, within EX31_RS02990at 82.810 kb on - strand, within EX31_RS02990at 82.810 kb on - strand, within EX31_RS02990at 82.810 kb on - strand, within EX31_RS02990at 82.810 kb on - strand, within EX31_RS02990at 82.820 kb on - strand, within EX31_RS02990at 82.908 kb on - strand, within EX31_RS02990at 82.909 kb on + strand, within EX31_RS02990at 82.910 kb on - strand, within EX31_RS02990at 82.936 kb on - strand, within EX31_RS02990at 82.936 kb on - strand, within EX31_RS02990at 82.936 kb on - strand, within EX31_RS02990at 82.936 kb on - strand, within EX31_RS02990at 83.038 kb on + strandat 83.059 kb on + strandat 83.096 kb on - strandat 83.134 kb on - strandat 83.205 kb on - strand, within EX31_RS02995at 83.249 kb on - strand, within EX31_RS02995at 83.259 kb on - strand, within EX31_RS02995at 83.277 kb on - strand, within EX31_RS02995at 83.312 kb on + strand, within EX31_RS02995at 83.313 kb on - strand, within EX31_RS02995at 83.313 kb on - strand, within EX31_RS02995at 83.315 kb on - strand, within EX31_RS02995at 83.315 kb on - strand, within EX31_RS02995at 83.426 kb on + strandat 83.427 kb on - strandat 83.430 kb on + strandat 83.430 kb on + strandat 83.431 kb on - strandat 83.441 kb on + strandat 83.446 kb on - strandat 83.446 kb on - strandat 83.448 kb on - strandat 83.448 kb on - strandat 83.448 kb on - strandat 83.448 kb on - strandat 83.474 kb on + strandat 83.475 kb on - strandat 83.497 kb on + strandat 83.507 kb on - strandat 83.507 kb on - strandat 83.524 kb on + strand, within EX31_RS03000at 83.536 kb on + strand, within EX31_RS03000at 83.609 kb on - strand, within EX31_RS03000at 83.663 kb on - strand, within EX31_RS03000at 83.669 kb on + strand, within EX31_RS03000at 83.670 kb on - strand, within EX31_RS03000at 83.680 kb on + strand, within EX31_RS03000at 83.680 kb on + strand, within EX31_RS03000at 83.680 kb on + strand, within EX31_RS03000at 83.681 kb on - strand, within EX31_RS03000at 83.681 kb on - strand, within EX31_RS03000at 83.684 kb on + strand, within EX31_RS03000at 83.684 kb on + strand, within EX31_RS03000at 83.685 kb on - strand, within EX31_RS03000at 83.685 kb on - strand, within EX31_RS03000at 83.685 kb on - strand, within EX31_RS03000at 83.685 kb on - strand, within EX31_RS03000at 83.690 kb on - strand, within EX31_RS03000at 83.690 kb on - strand, within EX31_RS03000at 83.690 kb on - strand, within EX31_RS03000at 83.690 kb on - strand, within EX31_RS03000at 83.690 kb on - strand, within EX31_RS03000at 83.701 kb on - strand, within EX31_RS03000at 83.701 kb on - strand, within EX31_RS03000at 83.726 kb on - strandat 83.726 kb on - strandat 83.738 kb on - strandat 83.814 kb on + strand, within EX31_RS03005at 83.814 kb on + strand, within EX31_RS03005at 83.814 kb on + strand, within EX31_RS03005at 83.814 kb on + strand, within EX31_RS03005at 83.814 kb on + strand, within EX31_RS03005at 83.815 kb on - strand, within EX31_RS03005at 83.835 kb on + strand, within EX31_RS03005at 83.835 kb on + strand, within EX31_RS03005at 83.836 kb on - strand, within EX31_RS03005at 83.836 kb on - strand, within EX31_RS03005at 83.836 kb on - strand, within EX31_RS03005at 83.836 kb on - strand, within EX31_RS03005at 83.836 kb on - strand, within EX31_RS03005at 83.857 kb on + strand, within EX31_RS03005at 83.859 kb on + strand, within EX31_RS03005at 83.860 kb on - strand, within EX31_RS03005at 83.870 kb on - strand, within EX31_RS03005at 83.894 kb on - strand, within EX31_RS03005at 83.958 kb on + strand, within EX31_RS03005at 83.958 kb on + strand, within EX31_RS03005at 83.958 kb on + strand, within EX31_RS03005at 83.958 kb on + strand, within EX31_RS03005at 83.959 kb on - strand, within EX31_RS03005at 83.959 kb on - strand, within EX31_RS03005at 84.031 kb on - strand, within EX31_RS03005at 84.033 kb on + strand, within EX31_RS03005at 84.045 kb on + strand, within EX31_RS03005at 84.045 kb on + strand, within EX31_RS03005at 84.060 kb on + strand, within EX31_RS03005at 84.060 kb on + strand, within EX31_RS03005at 84.093 kb on - strand, within EX31_RS03005at 84.179 kb on + strand, within EX31_RS03005at 84.180 kb on - strand, within EX31_RS03005at 84.226 kb on - strand, within EX31_RS03005at 84.226 kb on - strand, within EX31_RS03005at 84.226 kb on - strand, within EX31_RS03005at 84.243 kb on + strand, within EX31_RS03005at 84.243 kb on + strand, within EX31_RS03005at 84.243 kb on + strand, within EX31_RS03005at 84.243 kb on + strand, within EX31_RS03005at 84.243 kb on + strand, within EX31_RS03005at 84.243 kb on + strand, within EX31_RS03005at 84.243 kb on + strand, within EX31_RS03005at 84.243 kb on + strand, within EX31_RS03005at 84.244 kb on - strand, within EX31_RS03005at 84.244 kb on - strand, within EX31_RS03005at 84.244 kb on - strand, within EX31_RS03005at 84.244 kb on - strand, within EX31_RS03005at 84.244 kb on - strand, within EX31_RS03005at 84.244 kb on - strand, within EX31_RS03005at 84.244 kb on - strand, within EX31_RS03005at 84.244 kb on - strand, within EX31_RS03005at 84.244 kb on - strand, within EX31_RS03005at 84.244 kb on - strand, within EX31_RS03005at 84.247 kb on + strand, within EX31_RS03005at 84.247 kb on + strand, within EX31_RS03005at 84.248 kb on - strand, within EX31_RS03005at 84.248 kb on - strand, within EX31_RS03005at 84.248 kb on - strand, within EX31_RS03005at 84.248 kb on - strand, within EX31_RS03005at 84.248 kb on - strand, within EX31_RS03005at 84.274 kb on + strand, within EX31_RS03005at 84.274 kb on + strand, within EX31_RS03005at 84.275 kb on - strand, within EX31_RS03005at 84.275 kb on - strand, within EX31_RS03005at 84.328 kb on + strandat 84.330 kb on + strandat 84.330 kb on + strandat 84.331 kb on - strandat 84.331 kb on - strandat 84.331 kb on - strandat 84.331 kb on - strandat 84.331 kb on - strandat 84.331 kb on - strandat 84.351 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
remove
82,174 + -1.0
82,174 + +0.6
82,175 - +0.6
82,182 - -0.0
82,182 - +0.9
82,191 - +1.8
82,191 - +1.3
82,191 - -0.0
82,197 - +0.4
82,197 - +1.9
82,197 - +0.9
82,197 - +1.0
82,199 - +0.3
82,199 - +0.8
82,202 + EX31_RS02990 0.10 +0.3
82,202 + EX31_RS02990 0.10 -0.0
82,202 + EX31_RS02990 0.10 +0.3
82,203 - EX31_RS02990 0.10 +1.0
82,203 - EX31_RS02990 0.10 -0.5
82,203 - EX31_RS02990 0.10 +0.1
82,210 + EX31_RS02990 0.11 +0.8
82,232 - EX31_RS02990 0.13 -1.6
82,232 - EX31_RS02990 0.13 -0.1
82,276 + EX31_RS02990 0.18 -0.1
82,276 + EX31_RS02990 0.18 -0.7
82,276 + EX31_RS02990 0.18 +0.8
82,276 + EX31_RS02990 0.18 +1.0
82,276 + EX31_RS02990 0.18 +2.3
82,276 + EX31_RS02990 0.18 -0.2
82,276 + EX31_RS02990 0.18 +0.6
82,277 - EX31_RS02990 0.18 +0.4
82,277 - EX31_RS02990 0.18 +1.2
82,277 - EX31_RS02990 0.18 -0.7
82,335 + EX31_RS02990 0.24 +0.6
82,367 + EX31_RS02990 0.27 +0.1
82,367 + EX31_RS02990 0.27 +0.4
82,367 + EX31_RS02990 0.27 +0.6
82,368 - EX31_RS02990 0.27 +0.1
82,368 - EX31_RS02990 0.27 +1.7
82,414 + EX31_RS02990 0.32 +0.3
82,414 + EX31_RS02990 0.32 +0.4
82,421 - EX31_RS02990 0.33 +0.2
82,432 + EX31_RS02990 0.34 -0.1
82,433 - EX31_RS02990 0.34 -0.7
82,436 + EX31_RS02990 0.34 -0.3
82,437 - EX31_RS02990 0.35 +1.0
82,437 - EX31_RS02990 0.35 -0.1
82,526 + EX31_RS02990 0.44 +0.3
82,526 + EX31_RS02990 0.44 -0.7
82,544 + EX31_RS02990 0.46 -0.1
82,545 - EX31_RS02990 0.46 +0.2
82,545 - EX31_RS02990 0.46 -0.8
82,558 + EX31_RS02990 0.47 -0.8
82,559 - EX31_RS02990 0.47 -1.3
82,559 - EX31_RS02990 0.47 +1.1
82,559 - EX31_RS02990 0.47 -0.7
82,602 + EX31_RS02990 0.52 +0.8
82,603 - EX31_RS02990 0.52 -0.1
82,607 + EX31_RS02990 0.52 -2.9
82,608 - EX31_RS02990 0.52 +3.3
82,610 + EX31_RS02990 0.52 +0.1
82,610 + EX31_RS02990 0.52 -1.5
82,610 + EX31_RS02990 0.52 +1.3
82,630 - EX31_RS02990 0.55 +0.0
82,630 - EX31_RS02990 0.55 +0.3
82,630 - EX31_RS02990 0.55 +1.3
82,631 + EX31_RS02990 0.55 -0.4
82,631 + EX31_RS02990 0.55 +0.3
82,631 + EX31_RS02990 0.55 +1.3
82,631 + EX31_RS02990 0.55 +1.9
82,632 - EX31_RS02990 0.55 -0.7
82,656 - EX31_RS02990 0.57 +2.0
82,775 - EX31_RS02990 0.70 -1.4
82,796 + EX31_RS02990 0.72 +0.2
82,796 + EX31_RS02990 0.72 -0.3
82,796 + EX31_RS02990 0.72 +0.3
82,796 + EX31_RS02990 0.72 -0.8
82,796 + EX31_RS02990 0.72 +2.3
82,797 - EX31_RS02990 0.72 +0.3
82,797 - EX31_RS02990 0.72 +0.2
82,797 - EX31_RS02990 0.72 +0.1
82,797 - EX31_RS02990 0.72 -0.7
82,797 - EX31_RS02990 0.72 +0.7
82,797 - EX31_RS02990 0.72 +1.0
82,797 - EX31_RS02990 0.72 +0.1
82,797 - EX31_RS02990 0.72 -1.7
82,797 - EX31_RS02990 0.72 +0.7
82,798 + EX31_RS02990 0.72 -1.3
82,799 - EX31_RS02990 0.72 +1.4
82,799 - EX31_RS02990 0.72 +1.4
82,799 - EX31_RS02990 0.72 -1.0
82,809 + EX31_RS02990 0.73 -2.4
82,810 - EX31_RS02990 0.73 +1.1
82,810 - EX31_RS02990 0.73 -1.5
82,810 - EX31_RS02990 0.73 -0.5
82,810 - EX31_RS02990 0.73 -0.3
82,820 - EX31_RS02990 0.74 -0.4
82,908 - EX31_RS02990 0.83 -0.1
82,909 + EX31_RS02990 0.83 +0.9
82,910 - EX31_RS02990 0.84 -0.3
82,936 - EX31_RS02990 0.86 -1.0
82,936 - EX31_RS02990 0.86 -1.2
82,936 - EX31_RS02990 0.86 -0.7
82,936 - EX31_RS02990 0.86 -1.8
83,038 + -0.5
83,059 + +0.1
83,096 - +1.0
83,134 - -0.5
83,205 - EX31_RS02995 0.29 -0.3
83,249 - EX31_RS02995 0.46 -0.7
83,259 - EX31_RS02995 0.50 -0.1
83,277 - EX31_RS02995 0.57 -2.7
83,312 + EX31_RS02995 0.71 -0.7
83,313 - EX31_RS02995 0.71 -1.9
83,313 - EX31_RS02995 0.71 -0.4
83,315 - EX31_RS02995 0.72 -1.1
83,315 - EX31_RS02995 0.72 -1.5
83,426 + +0.3
83,427 - -0.2
83,430 + -0.3
83,430 + -0.1
83,431 - +0.1
83,441 + -0.3
83,446 - +0.0
83,446 - -1.9
83,448 - +0.5
83,448 - +0.7
83,448 - -0.2
83,448 - +1.3
83,474 + +1.1
83,475 - +0.8
83,497 + +0.7
83,507 - +0.6
83,507 - -0.4
83,524 + EX31_RS03000 0.13 -0.7
83,536 + EX31_RS03000 0.17 -0.4
83,609 - EX31_RS03000 0.46 +0.6
83,663 - EX31_RS03000 0.67 -0.1
83,669 + EX31_RS03000 0.69 +0.6
83,670 - EX31_RS03000 0.70 -0.8
83,680 + EX31_RS03000 0.74 +1.1
83,680 + EX31_RS03000 0.74 -0.3
83,680 + EX31_RS03000 0.74 +0.2
83,681 - EX31_RS03000 0.74 +0.1
83,681 - EX31_RS03000 0.74 +0.7
83,684 + EX31_RS03000 0.75 -1.5
83,684 + EX31_RS03000 0.75 -2.1
83,685 - EX31_RS03000 0.76 +0.9
83,685 - EX31_RS03000 0.76 +0.8
83,685 - EX31_RS03000 0.76 -0.7
83,685 - EX31_RS03000 0.76 +0.3
83,690 - EX31_RS03000 0.78 -0.7
83,690 - EX31_RS03000 0.78 +0.2
83,690 - EX31_RS03000 0.78 +0.1
83,690 - EX31_RS03000 0.78 +2.2
83,690 - EX31_RS03000 0.78 -0.5
83,701 - EX31_RS03000 0.82 +0.5
83,701 - EX31_RS03000 0.82 +1.6
83,726 - -0.7
83,726 - -0.3
83,738 - +0.6
83,814 + EX31_RS03005 0.12 +0.1
83,814 + EX31_RS03005 0.12 +0.3
83,814 + EX31_RS03005 0.12 +1.3
83,814 + EX31_RS03005 0.12 +0.1
83,814 + EX31_RS03005 0.12 +0.5
83,815 - EX31_RS03005 0.12 -2.0
83,835 + EX31_RS03005 0.15 +0.8
83,835 + EX31_RS03005 0.15 -1.0
83,836 - EX31_RS03005 0.15 +1.3
83,836 - EX31_RS03005 0.15 +1.6
83,836 - EX31_RS03005 0.15 -0.1
83,836 - EX31_RS03005 0.15 +0.7
83,836 - EX31_RS03005 0.15 +0.9
83,857 + EX31_RS03005 0.18 +0.9
83,859 + EX31_RS03005 0.19 +0.3
83,860 - EX31_RS03005 0.19 -0.6
83,870 - EX31_RS03005 0.20 -1.0
83,894 - EX31_RS03005 0.24 +2.0
83,958 + EX31_RS03005 0.34 +0.4
83,958 + EX31_RS03005 0.34 +1.3
83,958 + EX31_RS03005 0.34 +0.9
83,958 + EX31_RS03005 0.34 +0.6
83,959 - EX31_RS03005 0.34 +2.3
83,959 - EX31_RS03005 0.34 -0.3
84,031 - EX31_RS03005 0.45 +1.9
84,033 + EX31_RS03005 0.45 -0.3
84,045 + EX31_RS03005 0.47 -1.1
84,045 + EX31_RS03005 0.47 +0.9
84,060 + EX31_RS03005 0.49 +1.3
84,060 + EX31_RS03005 0.49 +0.3
84,093 - EX31_RS03005 0.54 +0.6
84,179 + EX31_RS03005 0.67 +0.7
84,180 - EX31_RS03005 0.68 +0.1
84,226 - EX31_RS03005 0.75 +0.3
84,226 - EX31_RS03005 0.75 +0.6
84,226 - EX31_RS03005 0.75 -1.0
84,243 + EX31_RS03005 0.77 -1.7
84,243 + EX31_RS03005 0.77 +2.3
84,243 + EX31_RS03005 0.77 -0.1
84,243 + EX31_RS03005 0.77 -2.3
84,243 + EX31_RS03005 0.77 +0.7
84,243 + EX31_RS03005 0.77 -1.4
84,243 + EX31_RS03005 0.77 -0.9
84,243 + EX31_RS03005 0.77 -0.3
84,244 - EX31_RS03005 0.77 -1.7
84,244 - EX31_RS03005 0.77 -1.5
84,244 - EX31_RS03005 0.77 +1.9
84,244 - EX31_RS03005 0.77 +1.5
84,244 - EX31_RS03005 0.77 +0.1
84,244 - EX31_RS03005 0.77 +1.3
84,244 - EX31_RS03005 0.77 +0.3
84,244 - EX31_RS03005 0.77 +0.1
84,244 - EX31_RS03005 0.77 -0.2
84,244 - EX31_RS03005 0.77 +1.9
84,247 + EX31_RS03005 0.78 -0.5
84,247 + EX31_RS03005 0.78 -0.3
84,248 - EX31_RS03005 0.78 +0.3
84,248 - EX31_RS03005 0.78 +0.2
84,248 - EX31_RS03005 0.78 +1.0
84,248 - EX31_RS03005 0.78 -1.0
84,248 - EX31_RS03005 0.78 +0.5
84,274 + EX31_RS03005 0.82 +1.0
84,274 + EX31_RS03005 0.82 +0.7
84,275 - EX31_RS03005 0.82 +0.3
84,275 - EX31_RS03005 0.82 +0.5
84,328 + +1.0
84,330 + +1.7
84,330 + -0.4
84,331 - +0.8
84,331 - +0.6
84,331 - +1.0
84,331 - +1.4
84,331 - +0.3
84,331 - -0.9
84,351 - -1.0

Or see this region's nucleotide sequence