Experiment: Sucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02655 and EX31_RS02660 are separated by 87 nucleotides EX31_RS02660 and EX31_RS02665 are separated by 11 nucleotides EX31_RS02665 and EX31_RS02670 are separated by 128 nucleotides EX31_RS02670 and EX31_RS02675 overlap by 1 nucleotides
EX31_RS02655: EX31_RS02655 - deoxyribonuclease I, at 4,683 to 5,396
_RS02655
EX31_RS02660: EX31_RS02660 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 5,484 to 6,215
_RS02660
EX31_RS02665: EX31_RS02665 - glutathione synthase, at 6,227 to 7,177
_RS02665
EX31_RS02670: EX31_RS02670 - YqgE/AlgH family protein, at 7,306 to 7,869
_RS02670
EX31_RS02675: EX31_RS02675 - Holliday junction resolvase RuvX, at 7,869 to 8,297
_RS02675
Position (kb) 6
7
8 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5.235 kb on + strand, within EX31_RS02655 at 5.342 kb on - strand at 5.361 kb on + strand at 5.362 kb on - strand at 5.395 kb on - strand at 5.399 kb on + strand at 5.399 kb on + strand at 5.399 kb on + strand at 5.399 kb on + strand at 5.399 kb on + strand at 5.399 kb on + strand at 5.399 kb on + strand at 5.399 kb on + strand at 5.399 kb on + strand at 5.399 kb on + strand at 5.399 kb on + strand at 5.399 kb on + strand at 5.399 kb on + strand at 5.399 kb on + strand at 5.399 kb on + strand at 5.399 kb on + strand at 5.399 kb on + strand at 5.399 kb on + strand at 5.399 kb on + strand at 5.400 kb on - strand at 5.400 kb on - strand at 5.400 kb on - strand at 5.400 kb on - strand at 5.400 kb on - strand at 5.400 kb on - strand at 5.400 kb on - strand at 5.400 kb on - strand at 5.400 kb on - strand at 5.400 kb on - strand at 5.400 kb on - strand at 5.400 kb on - strand at 5.402 kb on + strand at 5.402 kb on + strand at 5.402 kb on + strand at 5.403 kb on - strand at 5.403 kb on - strand at 5.403 kb on - strand at 5.403 kb on - strand at 5.403 kb on - strand at 5.403 kb on - strand at 5.403 kb on - strand at 5.404 kb on + strand at 5.404 kb on + strand at 5.404 kb on + strand at 5.404 kb on + strand at 5.404 kb on + strand at 5.405 kb on - strand at 5.405 kb on - strand at 5.405 kb on - strand at 5.405 kb on - strand at 5.405 kb on - strand at 5.405 kb on - strand at 5.405 kb on - strand at 5.414 kb on + strand at 5.414 kb on + strand at 5.414 kb on + strand at 5.414 kb on + strand at 5.415 kb on - strand at 5.415 kb on - strand at 5.466 kb on + strand at 5.467 kb on - strand at 5.467 kb on - strand at 5.467 kb on - strand at 5.491 kb on + strand at 5.492 kb on - strand at 5.502 kb on + strand at 5.502 kb on + strand at 5.502 kb on + strand at 5.502 kb on + strand at 5.503 kb on - strand at 5.503 kb on - strand at 5.582 kb on + strand, within EX31_RS02660 at 5.583 kb on - strand, within EX31_RS02660 at 5.608 kb on + strand, within EX31_RS02660 at 5.608 kb on + strand, within EX31_RS02660 at 5.657 kb on + strand, within EX31_RS02660 at 5.780 kb on + strand, within EX31_RS02660 at 5.780 kb on + strand, within EX31_RS02660 at 5.804 kb on + strand, within EX31_RS02660 at 5.804 kb on + strand, within EX31_RS02660 at 5.804 kb on + strand, within EX31_RS02660 at 5.804 kb on + strand, within EX31_RS02660 at 5.805 kb on - strand, within EX31_RS02660 at 5.915 kb on + strand, within EX31_RS02660 at 5.915 kb on + strand, within EX31_RS02660 at 5.915 kb on + strand, within EX31_RS02660 at 5.915 kb on + strand, within EX31_RS02660 at 5.916 kb on - strand, within EX31_RS02660 at 6.020 kb on + strand, within EX31_RS02660 at 6.021 kb on - strand, within EX31_RS02660 at 6.153 kb on - strand at 6.179 kb on + strand at 6.180 kb on - strand at 6.187 kb on + strand at 6.188 kb on - strand at 6.214 kb on - strand at 6.232 kb on + strand at 6.232 kb on + strand at 6.233 kb on - strand at 6.233 kb on - strand at 6.295 kb on + strand at 6.335 kb on + strand, within EX31_RS02665 at 6.335 kb on + strand, within EX31_RS02665 at 6.335 kb on + strand, within EX31_RS02665 at 6.335 kb on + strand, within EX31_RS02665 at 6.335 kb on + strand, within EX31_RS02665 at 6.335 kb on + strand, within EX31_RS02665 at 6.335 kb on + strand, within EX31_RS02665 at 6.335 kb on + strand, within EX31_RS02665 at 6.335 kb on + strand, within EX31_RS02665 at 6.335 kb on + strand, within EX31_RS02665 at 6.336 kb on - strand, within EX31_RS02665 at 6.336 kb on - strand, within EX31_RS02665 at 6.336 kb on - strand, within EX31_RS02665 at 6.336 kb on - strand, within EX31_RS02665 at 6.413 kb on + strand, within EX31_RS02665 at 6.414 kb on - strand, within EX31_RS02665 at 6.485 kb on - strand, within EX31_RS02665 at 6.515 kb on + strand, within EX31_RS02665 at 6.515 kb on + strand, within EX31_RS02665 at 6.516 kb on - strand, within EX31_RS02665 at 6.524 kb on + strand, within EX31_RS02665 at 6.524 kb on + strand, within EX31_RS02665 at 6.524 kb on + strand, within EX31_RS02665 at 6.524 kb on + strand, within EX31_RS02665 at 6.524 kb on + strand, within EX31_RS02665 at 6.524 kb on + strand, within EX31_RS02665 at 6.524 kb on + strand, within EX31_RS02665 at 6.524 kb on + strand, within EX31_RS02665 at 6.524 kb on + strand, within EX31_RS02665 at 6.525 kb on - strand, within EX31_RS02665 at 6.525 kb on - strand, within EX31_RS02665 at 6.525 kb on - strand, within EX31_RS02665 at 6.525 kb on - strand, within EX31_RS02665 at 6.525 kb on - strand, within EX31_RS02665 at 6.525 kb on - strand, within EX31_RS02665 at 6.568 kb on + strand, within EX31_RS02665 at 6.592 kb on + strand, within EX31_RS02665 at 6.824 kb on + strand, within EX31_RS02665 at 6.824 kb on + strand, within EX31_RS02665 at 6.825 kb on - strand, within EX31_RS02665 at 7.045 kb on + strand, within EX31_RS02665 at 7.072 kb on + strand, within EX31_RS02665 at 7.175 kb on + strand at 7.175 kb on + strand at 7.176 kb on - strand at 7.176 kb on - strand at 7.186 kb on + strand at 7.186 kb on + strand at 7.187 kb on - strand at 7.249 kb on + strand at 7.249 kb on + strand at 7.249 kb on + strand at 7.249 kb on + strand at 7.252 kb on + strand at 7.253 kb on - strand at 7.289 kb on + strand at 7.289 kb on + strand at 7.302 kb on + strand at 7.313 kb on + strand at 7.378 kb on + strand, within EX31_RS02670 at 7.378 kb on + strand, within EX31_RS02670 at 7.378 kb on + strand, within EX31_RS02670 at 7.378 kb on + strand, within EX31_RS02670 at 7.378 kb on + strand, within EX31_RS02670 at 7.770 kb on + strand, within EX31_RS02670
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose (C) remove 5,235 + EX31_RS02655 0.77 -1.6 5,342 - +0.2 5,361 + -0.3 5,362 - +1.3 5,395 - -0.1 5,399 + +1.3 5,399 + -0.3 5,399 + +0.7 5,399 + +0.5 5,399 + -0.5 5,399 + -1.4 5,399 + +1.6 5,399 + +0.7 5,399 + -0.7 5,399 + -1.0 5,399 + -0.3 5,399 + -0.7 5,399 + +1.6 5,399 + -0.3 5,399 + +0.4 5,399 + +0.3 5,399 + +0.8 5,399 + +0.4 5,399 + +0.7 5,400 - +2.3 5,400 - +0.1 5,400 - +1.2 5,400 - -1.0 5,400 - -0.7 5,400 - -1.0 5,400 - +1.3 5,400 - -1.2 5,400 - +0.7 5,400 - +0.7 5,400 - +0.2 5,400 - +0.3 5,402 + +1.0 5,402 + +0.8 5,402 + +1.3 5,403 - -0.1 5,403 - +1.0 5,403 - -1.0 5,403 - +0.3 5,403 - +0.3 5,403 - -0.9 5,403 - +1.1 5,404 + -0.2 5,404 + -0.8 5,404 + +0.5 5,404 + +0.6 5,404 + +0.1 5,405 - +0.7 5,405 - -0.7 5,405 - +0.9 5,405 - +0.6 5,405 - +0.8 5,405 - +1.3 5,405 - -0.5 5,414 + -1.7 5,414 + -0.3 5,414 + +0.9 5,414 + -1.0 5,415 - +0.9 5,415 - -0.9 5,466 + -0.3 5,467 - -1.7 5,467 - +0.6 5,467 - -1.8 5,491 + -0.7 5,492 - +0.4 5,502 + -0.3 5,502 + +0.4 5,502 + +0.5 5,502 + -1.3 5,503 - -0.3 5,503 - +0.1 5,582 + EX31_RS02660 0.13 +0.4 5,583 - EX31_RS02660 0.14 -0.1 5,608 + EX31_RS02660 0.17 +0.7 5,608 + EX31_RS02660 0.17 -0.2 5,657 + EX31_RS02660 0.24 +1.3 5,780 + EX31_RS02660 0.40 -0.1 5,780 + EX31_RS02660 0.40 +0.6 5,804 + EX31_RS02660 0.44 +0.1 5,804 + EX31_RS02660 0.44 -0.7 5,804 + EX31_RS02660 0.44 +0.7 5,804 + EX31_RS02660 0.44 +0.3 5,805 - EX31_RS02660 0.44 -0.6 5,915 + EX31_RS02660 0.59 -0.3 5,915 + EX31_RS02660 0.59 -0.5 5,915 + EX31_RS02660 0.59 +1.3 5,915 + EX31_RS02660 0.59 +0.8 5,916 - EX31_RS02660 0.59 +1.3 6,020 + EX31_RS02660 0.73 +0.8 6,021 - EX31_RS02660 0.73 -0.9 6,153 - -0.5 6,179 + +0.2 6,180 - -3.6 6,187 + -1.9 6,188 - -0.5 6,214 - +0.6 6,232 + -0.7 6,232 + +1.9 6,233 - -0.3 6,233 - +0.7 6,295 + -0.3 6,335 + EX31_RS02665 0.11 -0.7 6,335 + EX31_RS02665 0.11 +0.7 6,335 + EX31_RS02665 0.11 -1.9 6,335 + EX31_RS02665 0.11 +0.1 6,335 + EX31_RS02665 0.11 +0.1 6,335 + EX31_RS02665 0.11 -0.3 6,335 + EX31_RS02665 0.11 -0.7 6,335 + EX31_RS02665 0.11 -1.5 6,335 + EX31_RS02665 0.11 -1.3 6,335 + EX31_RS02665 0.11 +1.3 6,336 - EX31_RS02665 0.11 -2.5 6,336 - EX31_RS02665 0.11 +1.3 6,336 - EX31_RS02665 0.11 +1.6 6,336 - EX31_RS02665 0.11 +0.3 6,413 + EX31_RS02665 0.20 -0.9 6,414 - EX31_RS02665 0.20 -0.1 6,485 - EX31_RS02665 0.27 +0.3 6,515 + EX31_RS02665 0.30 -0.7 6,515 + EX31_RS02665 0.30 +1.3 6,516 - EX31_RS02665 0.30 +0.3 6,524 + EX31_RS02665 0.31 +2.3 6,524 + EX31_RS02665 0.31 -0.3 6,524 + EX31_RS02665 0.31 -0.3 6,524 + EX31_RS02665 0.31 -0.7 6,524 + EX31_RS02665 0.31 -0.7 6,524 + EX31_RS02665 0.31 -0.7 6,524 + EX31_RS02665 0.31 -1.0 6,524 + EX31_RS02665 0.31 -0.7 6,524 + EX31_RS02665 0.31 -1.5 6,525 - EX31_RS02665 0.31 -0.3 6,525 - EX31_RS02665 0.31 -1.4 6,525 - EX31_RS02665 0.31 +0.3 6,525 - EX31_RS02665 0.31 -1.7 6,525 - EX31_RS02665 0.31 +0.9 6,525 - EX31_RS02665 0.31 +1.3 6,568 + EX31_RS02665 0.36 -0.3 6,592 + EX31_RS02665 0.38 -2.3 6,824 + EX31_RS02665 0.63 -0.5 6,824 + EX31_RS02665 0.63 +0.8 6,825 - EX31_RS02665 0.63 -1.5 7,045 + EX31_RS02665 0.86 -1.0 7,072 + EX31_RS02665 0.89 -2.1 7,175 + +0.1 7,175 + -0.4 7,176 - -0.4 7,176 - +0.3 7,186 + +0.9 7,186 + -1.7 7,187 - +2.6 7,249 + +1.2 7,249 + +0.5 7,249 + +0.4 7,249 + -0.3 7,252 + -0.6 7,253 - +0.1 7,289 + -1.3 7,289 + +1.0 7,302 + -0.3 7,313 + -0.8 7,378 + EX31_RS02670 0.13 +0.6 7,378 + EX31_RS02670 0.13 +0.5 7,378 + EX31_RS02670 0.13 +1.1 7,378 + EX31_RS02670 0.13 -0.1 7,378 + EX31_RS02670 0.13 +1.0 7,770 + EX31_RS02670 0.82 -1.5
Or see this region's nucleotide sequence