Strain Fitness in Rahnella sp. WP5 around EX31_RS02180

Experiment: Sucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS02170 and EX31_RS02175 are separated by 93 nucleotidesEX31_RS02175 and EX31_RS02180 are separated by 18 nucleotidesEX31_RS02180 and EX31_RS02185 are separated by 278 nucleotides EX31_RS02170: EX31_RS02170 - porin, at 472,787 to 473,353 _RS02170 EX31_RS02175: EX31_RS02175 - peptide-methionine (S)-S-oxide reductase MsrA, at 473,447 to 474,175 _RS02175 EX31_RS02180: EX31_RS02180 - peptide-methionine (R)-S-oxide reductase MsrB, at 474,194 to 474,700 _RS02180 EX31_RS02185: EX31_RS02185 - glycoside hydrolase family 31 protein, at 474,979 to 477,018 _RS02185 Position (kb) 474 475Strain fitness (log2 ratio) -2 -1 0 1 2at 473.314 kb on + strandat 473.327 kb on + strandat 473.327 kb on + strandat 473.328 kb on - strandat 473.356 kb on + strandat 473.494 kb on - strandat 473.537 kb on - strand, within EX31_RS02175at 473.538 kb on + strand, within EX31_RS02175at 473.539 kb on - strand, within EX31_RS02175at 473.539 kb on - strand, within EX31_RS02175at 473.544 kb on + strand, within EX31_RS02175at 473.638 kb on - strand, within EX31_RS02175at 473.667 kb on + strand, within EX31_RS02175at 473.668 kb on - strand, within EX31_RS02175at 473.810 kb on + strand, within EX31_RS02175at 473.881 kb on - strand, within EX31_RS02175at 473.939 kb on + strand, within EX31_RS02175at 473.940 kb on - strand, within EX31_RS02175at 474.196 kb on - strandat 474.479 kb on + strand, within EX31_RS02180at 474.492 kb on + strand, within EX31_RS02180at 474.597 kb on - strand, within EX31_RS02180at 474.739 kb on + strandat 474.907 kb on + strandat 474.908 kb on - strandat 474.908 kb on - strandat 474.940 kb on + strandat 474.941 kb on - strandat 474.941 kb on - strandat 475.148 kb on + strandat 475.148 kb on + strandat 475.149 kb on - strandat 475.149 kb on - strandat 475.149 kb on - strandat 475.170 kb on + strandat 475.171 kb on - strandat 475.187 kb on + strand, within EX31_RS02185at 475.187 kb on + strand, within EX31_RS02185at 475.187 kb on + strand, within EX31_RS02185at 475.188 kb on - strand, within EX31_RS02185at 475.188 kb on - strand, within EX31_RS02185at 475.188 kb on - strand, within EX31_RS02185at 475.188 kb on - strand, within EX31_RS02185at 475.233 kb on - strand, within EX31_RS02185at 475.295 kb on + strand, within EX31_RS02185at 475.296 kb on - strand, within EX31_RS02185at 475.296 kb on - strand, within EX31_RS02185at 475.296 kb on - strand, within EX31_RS02185at 475.296 kb on - strand, within EX31_RS02185at 475.453 kb on + strand, within EX31_RS02185at 475.453 kb on + strand, within EX31_RS02185at 475.453 kb on + strand, within EX31_RS02185at 475.454 kb on - strand, within EX31_RS02185at 475.454 kb on - strand, within EX31_RS02185at 475.454 kb on - strand, within EX31_RS02185at 475.475 kb on - strand, within EX31_RS02185at 475.475 kb on - strand, within EX31_RS02185

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
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473,314 + +1.9
473,327 + +0.6
473,327 + +1.2
473,328 - +0.6
473,356 + -1.2
473,494 - -2.0
473,537 - EX31_RS02175 0.12 +1.5
473,538 + EX31_RS02175 0.12 -0.8
473,539 - EX31_RS02175 0.13 -0.6
473,539 - EX31_RS02175 0.13 -0.0
473,544 + EX31_RS02175 0.13 +0.5
473,638 - EX31_RS02175 0.26 +0.4
473,667 + EX31_RS02175 0.30 +1.0
473,668 - EX31_RS02175 0.30 -1.4
473,810 + EX31_RS02175 0.50 +0.2
473,881 - EX31_RS02175 0.60 +1.8
473,939 + EX31_RS02175 0.67 -0.4
473,940 - EX31_RS02175 0.68 +0.8
474,196 - +1.0
474,479 + EX31_RS02180 0.56 -1.9
474,492 + EX31_RS02180 0.59 -0.4
474,597 - EX31_RS02180 0.79 +0.2
474,739 + -1.6
474,907 + -1.0
474,908 - -1.6
474,908 - +1.5
474,940 + -0.4
474,941 - +2.5
474,941 - -1.2
475,148 + +0.9
475,148 + +1.2
475,149 - -0.4
475,149 - -0.7
475,149 - -0.6
475,170 + -0.4
475,171 - +0.2
475,187 + EX31_RS02185 0.10 +0.6
475,187 + EX31_RS02185 0.10 +0.7
475,187 + EX31_RS02185 0.10 +0.9
475,188 - EX31_RS02185 0.10 -1.8
475,188 - EX31_RS02185 0.10 +0.7
475,188 - EX31_RS02185 0.10 -0.4
475,188 - EX31_RS02185 0.10 +0.4
475,233 - EX31_RS02185 0.12 +0.8
475,295 + EX31_RS02185 0.15 +1.9
475,296 - EX31_RS02185 0.16 +1.2
475,296 - EX31_RS02185 0.16 +1.5
475,296 - EX31_RS02185 0.16 +0.8
475,296 - EX31_RS02185 0.16 -0.5
475,453 + EX31_RS02185 0.23 +0.6
475,453 + EX31_RS02185 0.23 +1.6
475,453 + EX31_RS02185 0.23 +2.4
475,454 - EX31_RS02185 0.23 +0.4
475,454 - EX31_RS02185 0.23 +0.1
475,454 - EX31_RS02185 0.23 -0.8
475,475 - EX31_RS02185 0.24 +0.9
475,475 - EX31_RS02185 0.24 +1.2

Or see this region's nucleotide sequence