Strain Fitness in Rahnella sp. WP5 around EX31_RS02040

Experiment: Sucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS02030 and EX31_RS02035 overlap by 17 nucleotidesEX31_RS02035 and EX31_RS02040 overlap by 4 nucleotidesEX31_RS02040 and EX31_RS02045 overlap by 4 nucleotides EX31_RS02030: EX31_RS02030 - ATP-binding cassette domain-containing protein, at 445,265 to 446,314 _RS02030 EX31_RS02035: EX31_RS02035 - ABC transporter ATP-binding protein, at 446,298 to 447,275 _RS02035 EX31_RS02040: EX31_RS02040 - ABC transporter permease subunit, at 447,272 to 448,132 _RS02040 EX31_RS02045: EX31_RS02045 - ABC transporter permease, at 448,129 to 449,067 _RS02045 Position (kb) 447 448 449Strain fitness (log2 ratio) -2 -1 0 1 2 3at 446.534 kb on + strand, within EX31_RS02035at 446.537 kb on - strand, within EX31_RS02035at 446.599 kb on + strand, within EX31_RS02035at 446.600 kb on - strand, within EX31_RS02035at 446.652 kb on - strand, within EX31_RS02035at 446.661 kb on - strand, within EX31_RS02035at 446.834 kb on - strand, within EX31_RS02035at 446.834 kb on - strand, within EX31_RS02035at 446.837 kb on + strand, within EX31_RS02035at 446.838 kb on - strand, within EX31_RS02035at 446.838 kb on - strand, within EX31_RS02035at 446.838 kb on - strand, within EX31_RS02035at 447.379 kb on + strand, within EX31_RS02040at 447.380 kb on - strand, within EX31_RS02040at 447.380 kb on - strand, within EX31_RS02040at 447.382 kb on + strand, within EX31_RS02040at 447.383 kb on - strand, within EX31_RS02040at 447.386 kb on - strand, within EX31_RS02040at 447.476 kb on + strand, within EX31_RS02040at 447.476 kb on + strand, within EX31_RS02040at 447.548 kb on + strand, within EX31_RS02040at 447.554 kb on - strand, within EX31_RS02040at 447.554 kb on - strand, within EX31_RS02040at 447.566 kb on - strand, within EX31_RS02040at 447.568 kb on - strand, within EX31_RS02040at 447.642 kb on + strand, within EX31_RS02040at 447.755 kb on + strand, within EX31_RS02040at 447.755 kb on + strand, within EX31_RS02040at 447.756 kb on - strand, within EX31_RS02040at 447.917 kb on - strand, within EX31_RS02040at 448.133 kb on - strandat 448.165 kb on + strandat 448.235 kb on + strand, within EX31_RS02045at 448.236 kb on - strand, within EX31_RS02045at 448.236 kb on - strand, within EX31_RS02045at 448.236 kb on - strand, within EX31_RS02045at 448.236 kb on - strand, within EX31_RS02045at 448.236 kb on - strand, within EX31_RS02045at 448.236 kb on - strand, within EX31_RS02045at 448.236 kb on - strand, within EX31_RS02045at 448.236 kb on - strand, within EX31_RS02045at 448.291 kb on + strand, within EX31_RS02045at 448.291 kb on + strand, within EX31_RS02045at 448.291 kb on + strand, within EX31_RS02045at 448.292 kb on - strand, within EX31_RS02045at 448.292 kb on - strand, within EX31_RS02045at 448.292 kb on - strand, within EX31_RS02045at 448.292 kb on - strand, within EX31_RS02045at 448.303 kb on + strand, within EX31_RS02045at 448.337 kb on - strand, within EX31_RS02045at 448.337 kb on - strand, within EX31_RS02045at 448.395 kb on + strand, within EX31_RS02045at 448.436 kb on + strand, within EX31_RS02045at 448.437 kb on - strand, within EX31_RS02045at 448.437 kb on - strand, within EX31_RS02045at 448.437 kb on - strand, within EX31_RS02045at 448.604 kb on - strand, within EX31_RS02045at 448.604 kb on - strand, within EX31_RS02045at 448.651 kb on - strand, within EX31_RS02045at 448.653 kb on + strand, within EX31_RS02045at 448.764 kb on - strand, within EX31_RS02045at 448.764 kb on - strand, within EX31_RS02045at 448.764 kb on - strand, within EX31_RS02045at 448.815 kb on - strand, within EX31_RS02045at 448.899 kb on - strand, within EX31_RS02045at 449.001 kb on + strandat 449.001 kb on + strandat 449.002 kb on - strandat 449.002 kb on - strandat 449.002 kb on - strandat 449.006 kb on - strandat 449.079 kb on + strandat 449.080 kb on - strandat 449.126 kb on + strandat 449.126 kb on + strandat 449.127 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
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446,534 + EX31_RS02035 0.24 +1.4
446,537 - EX31_RS02035 0.24 +0.7
446,599 + EX31_RS02035 0.31 +0.2
446,600 - EX31_RS02035 0.31 -0.9
446,652 - EX31_RS02035 0.36 -1.2
446,661 - EX31_RS02035 0.37 +0.2
446,834 - EX31_RS02035 0.55 +0.4
446,834 - EX31_RS02035 0.55 -0.3
446,837 + EX31_RS02035 0.55 +1.2
446,838 - EX31_RS02035 0.55 +1.7
446,838 - EX31_RS02035 0.55 +1.2
446,838 - EX31_RS02035 0.55 +0.6
447,379 + EX31_RS02040 0.12 +0.0
447,380 - EX31_RS02040 0.13 +0.6
447,380 - EX31_RS02040 0.13 +1.3
447,382 + EX31_RS02040 0.13 +0.3
447,383 - EX31_RS02040 0.13 +1.9
447,386 - EX31_RS02040 0.13 +0.4
447,476 + EX31_RS02040 0.24 -1.2
447,476 + EX31_RS02040 0.24 -0.4
447,548 + EX31_RS02040 0.32 +1.8
447,554 - EX31_RS02040 0.33 +0.6
447,554 - EX31_RS02040 0.33 +1.0
447,566 - EX31_RS02040 0.34 -1.4
447,568 - EX31_RS02040 0.34 -0.7
447,642 + EX31_RS02040 0.43 +1.2
447,755 + EX31_RS02040 0.56 +0.8
447,755 + EX31_RS02040 0.56 +1.2
447,756 - EX31_RS02040 0.56 +2.2
447,917 - EX31_RS02040 0.75 -1.4
448,133 - +1.2
448,165 + -1.6
448,235 + EX31_RS02045 0.11 +0.2
448,236 - EX31_RS02045 0.11 -0.1
448,236 - EX31_RS02045 0.11 +1.5
448,236 - EX31_RS02045 0.11 -1.4
448,236 - EX31_RS02045 0.11 +0.2
448,236 - EX31_RS02045 0.11 +1.2
448,236 - EX31_RS02045 0.11 +0.5
448,236 - EX31_RS02045 0.11 +0.8
448,236 - EX31_RS02045 0.11 +0.2
448,291 + EX31_RS02045 0.17 -0.7
448,291 + EX31_RS02045 0.17 +0.4
448,291 + EX31_RS02045 0.17 -0.6
448,292 - EX31_RS02045 0.17 -0.3
448,292 - EX31_RS02045 0.17 -1.2
448,292 - EX31_RS02045 0.17 +0.5
448,292 - EX31_RS02045 0.17 +0.6
448,303 + EX31_RS02045 0.19 +1.6
448,337 - EX31_RS02045 0.22 -1.2
448,337 - EX31_RS02045 0.22 +1.2
448,395 + EX31_RS02045 0.28 -0.5
448,436 + EX31_RS02045 0.33 -0.2
448,437 - EX31_RS02045 0.33 -0.8
448,437 - EX31_RS02045 0.33 -0.2
448,437 - EX31_RS02045 0.33 +0.6
448,604 - EX31_RS02045 0.51 -1.2
448,604 - EX31_RS02045 0.51 +0.3
448,651 - EX31_RS02045 0.56 +1.2
448,653 + EX31_RS02045 0.56 -0.7
448,764 - EX31_RS02045 0.68 +0.4
448,764 - EX31_RS02045 0.68 -1.4
448,764 - EX31_RS02045 0.68 +2.8
448,815 - EX31_RS02045 0.73 +0.4
448,899 - EX31_RS02045 0.82 +0.2
449,001 + +0.4
449,001 + +0.3
449,002 - +0.7
449,002 - +0.7
449,002 - -1.8
449,006 - -1.4
449,079 + +0.1
449,080 - +1.6
449,126 + -0.0
449,126 + -0.4
449,127 - +2.2

Or see this region's nucleotide sequence