Strain Fitness in Rahnella sp. WP5 around EX31_RS01115

Experiment: Sucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01110 and EX31_RS01115 are separated by 70 nucleotidesEX31_RS01115 and EX31_RS01120 are separated by 351 nucleotides EX31_RS01110: EX31_RS01110 - hypothetical protein, at 241,436 to 242,170 _RS01110 EX31_RS01115: EX31_RS01115 - ABC-F family ATP-binding cassette domain-containing protein, at 242,241 to 243,974 _RS01115 EX31_RS01120: EX31_RS01120 - MFS transporter, at 244,326 to 245,564 _RS01120 Position (kb) 242 243 244Strain fitness (log2 ratio) -2 -1 0 1 2 3at 241.266 kb on + strandat 241.312 kb on + strandat 241.312 kb on + strandat 241.333 kb on + strandat 241.333 kb on + strandat 241.359 kb on + strandat 241.374 kb on + strandat 241.382 kb on + strandat 241.438 kb on - strandat 241.611 kb on + strand, within EX31_RS01110at 241.611 kb on + strand, within EX31_RS01110at 241.611 kb on + strand, within EX31_RS01110at 241.612 kb on - strand, within EX31_RS01110at 241.612 kb on - strand, within EX31_RS01110at 241.657 kb on + strand, within EX31_RS01110at 241.681 kb on - strand, within EX31_RS01110at 241.686 kb on + strand, within EX31_RS01110at 241.686 kb on + strand, within EX31_RS01110at 241.687 kb on - strand, within EX31_RS01110at 241.687 kb on - strand, within EX31_RS01110at 241.688 kb on + strand, within EX31_RS01110at 241.689 kb on - strand, within EX31_RS01110at 241.689 kb on - strand, within EX31_RS01110at 241.689 kb on - strand, within EX31_RS01110at 241.969 kb on + strand, within EX31_RS01110at 241.969 kb on + strand, within EX31_RS01110at 241.969 kb on + strand, within EX31_RS01110at 241.970 kb on - strand, within EX31_RS01110at 241.970 kb on - strand, within EX31_RS01110at 241.970 kb on - strand, within EX31_RS01110at 241.970 kb on - strand, within EX31_RS01110at 241.970 kb on - strand, within EX31_RS01110at 241.971 kb on + strand, within EX31_RS01110at 241.971 kb on + strand, within EX31_RS01110at 241.971 kb on + strand, within EX31_RS01110at 241.971 kb on + strand, within EX31_RS01110at 241.971 kb on + strand, within EX31_RS01110at 241.971 kb on + strand, within EX31_RS01110at 241.972 kb on - strand, within EX31_RS01110at 241.972 kb on - strand, within EX31_RS01110at 241.972 kb on - strand, within EX31_RS01110at 241.972 kb on - strand, within EX31_RS01110at 241.993 kb on + strand, within EX31_RS01110at 241.993 kb on + strand, within EX31_RS01110at 242.203 kb on + strandat 242.203 kb on + strandat 242.208 kb on - strandat 242.218 kb on - strandat 242.220 kb on - strandat 242.230 kb on - strandat 242.234 kb on + strandat 242.234 kb on + strandat 242.235 kb on - strandat 242.235 kb on - strandat 242.235 kb on - strandat 242.235 kb on - strandat 242.235 kb on - strandat 242.235 kb on - strandat 242.235 kb on - strandat 242.242 kb on + strandat 242.243 kb on - strandat 242.243 kb on - strandat 242.474 kb on - strand, within EX31_RS01115at 242.474 kb on - strand, within EX31_RS01115at 242.658 kb on + strand, within EX31_RS01115at 242.671 kb on + strand, within EX31_RS01115at 242.672 kb on - strand, within EX31_RS01115at 242.755 kb on + strand, within EX31_RS01115at 242.872 kb on + strand, within EX31_RS01115at 242.876 kb on - strand, within EX31_RS01115at 242.933 kb on + strand, within EX31_RS01115at 243.492 kb on + strand, within EX31_RS01115at 243.493 kb on - strand, within EX31_RS01115at 243.537 kb on + strand, within EX31_RS01115at 243.725 kb on + strand, within EX31_RS01115at 243.725 kb on + strand, within EX31_RS01115at 243.726 kb on - strand, within EX31_RS01115at 243.726 kb on - strand, within EX31_RS01115at 243.726 kb on - strand, within EX31_RS01115at 243.945 kb on + strandat 243.945 kb on + strandat 243.964 kb on - strandat 243.964 kb on - strandat 243.964 kb on - strandat 243.983 kb on - strandat 243.983 kb on - strandat 244.038 kb on + strandat 244.069 kb on + strandat 244.070 kb on - strandat 244.183 kb on + strandat 244.184 kb on - strandat 244.184 kb on - strandat 244.184 kb on - strandat 244.184 kb on - strandat 244.184 kb on - strandat 244.185 kb on + strandat 244.185 kb on + strandat 244.185 kb on + strandat 244.185 kb on + strandat 244.185 kb on + strandat 244.186 kb on - strandat 244.186 kb on - strandat 244.186 kb on - strandat 244.186 kb on - strandat 244.186 kb on - strandat 244.186 kb on - strandat 244.186 kb on - strandat 244.186 kb on - strandat 244.187 kb on + strandat 244.188 kb on - strandat 244.188 kb on - strandat 244.188 kb on - strandat 244.188 kb on - strandat 244.188 kb on - strandat 244.188 kb on - strandat 244.188 kb on - strandat 244.214 kb on - strandat 244.215 kb on + strandat 244.554 kb on - strand, within EX31_RS01120at 244.563 kb on + strand, within EX31_RS01120at 244.595 kb on + strand, within EX31_RS01120at 244.782 kb on + strand, within EX31_RS01120at 244.783 kb on - strand, within EX31_RS01120at 244.783 kb on - strand, within EX31_RS01120at 244.792 kb on - strand, within EX31_RS01120at 244.860 kb on + strand, within EX31_RS01120

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
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241,266 + +0.4
241,312 + -0.1
241,312 + -0.1
241,333 + +0.4
241,333 + -1.3
241,359 + -0.0
241,374 + +0.9
241,382 + +0.3
241,438 - +1.4
241,611 + EX31_RS01110 0.24 +2.2
241,611 + EX31_RS01110 0.24 -1.4
241,611 + EX31_RS01110 0.24 +1.2
241,612 - EX31_RS01110 0.24 +1.2
241,612 - EX31_RS01110 0.24 -1.1
241,657 + EX31_RS01110 0.30 +0.0
241,681 - EX31_RS01110 0.33 +3.2
241,686 + EX31_RS01110 0.34 -0.8
241,686 + EX31_RS01110 0.34 +1.7
241,687 - EX31_RS01110 0.34 +0.2
241,687 - EX31_RS01110 0.34 +0.9
241,688 + EX31_RS01110 0.34 +1.2
241,689 - EX31_RS01110 0.34 +0.2
241,689 - EX31_RS01110 0.34 +0.1
241,689 - EX31_RS01110 0.34 +0.4
241,969 + EX31_RS01110 0.73 -0.7
241,969 + EX31_RS01110 0.73 +1.2
241,969 + EX31_RS01110 0.73 +1.8
241,970 - EX31_RS01110 0.73 -0.1
241,970 - EX31_RS01110 0.73 +1.5
241,970 - EX31_RS01110 0.73 +2.4
241,970 - EX31_RS01110 0.73 +0.5
241,970 - EX31_RS01110 0.73 +1.6
241,971 + EX31_RS01110 0.73 +2.1
241,971 + EX31_RS01110 0.73 -0.4
241,971 + EX31_RS01110 0.73 +0.2
241,971 + EX31_RS01110 0.73 +1.4
241,971 + EX31_RS01110 0.73 +0.2
241,971 + EX31_RS01110 0.73 +0.2
241,972 - EX31_RS01110 0.73 +0.2
241,972 - EX31_RS01110 0.73 -1.1
241,972 - EX31_RS01110 0.73 +1.3
241,972 - EX31_RS01110 0.73 +0.2
241,993 + EX31_RS01110 0.76 +1.2
241,993 + EX31_RS01110 0.76 -0.8
242,203 + +0.6
242,203 + +0.2
242,208 - -0.7
242,218 - -0.2
242,220 - -2.3
242,230 - -1.0
242,234 + -0.4
242,234 + -0.4
242,235 - -1.4
242,235 - -0.6
242,235 - +1.2
242,235 - +0.8
242,235 - -1.3
242,235 - +0.6
242,235 - +0.7
242,242 + +1.2
242,243 - +1.4
242,243 - +0.2
242,474 - EX31_RS01115 0.13 -0.8
242,474 - EX31_RS01115 0.13 +0.8
242,658 + EX31_RS01115 0.24 -0.1
242,671 + EX31_RS01115 0.25 +1.0
242,672 - EX31_RS01115 0.25 -0.8
242,755 + EX31_RS01115 0.30 +0.7
242,872 + EX31_RS01115 0.36 -0.2
242,876 - EX31_RS01115 0.37 +0.5
242,933 + EX31_RS01115 0.40 +0.3
243,492 + EX31_RS01115 0.72 +0.7
243,493 - EX31_RS01115 0.72 +1.8
243,537 + EX31_RS01115 0.75 +0.7
243,725 + EX31_RS01115 0.86 +1.0
243,725 + EX31_RS01115 0.86 +0.7
243,726 - EX31_RS01115 0.86 -0.4
243,726 - EX31_RS01115 0.86 +2.2
243,726 - EX31_RS01115 0.86 -0.8
243,945 + +0.3
243,945 + +1.6
243,964 - -0.4
243,964 - +0.2
243,964 - +0.2
243,983 - -0.9
243,983 - +0.7
244,038 + -0.4
244,069 + +1.2
244,070 - -1.1
244,183 + +1.2
244,184 - +0.2
244,184 - +0.8
244,184 - +1.4
244,184 - +0.2
244,184 - +0.4
244,185 + -0.8
244,185 + -0.4
244,185 + -0.4
244,185 + -0.4
244,185 + -0.1
244,186 - +0.8
244,186 - -0.1
244,186 - -0.1
244,186 - -1.6
244,186 - -0.5
244,186 - +0.9
244,186 - +1.0
244,186 - +0.6
244,187 + -1.4
244,188 - +0.4
244,188 - +0.6
244,188 - +0.9
244,188 - +0.2
244,188 - -1.1
244,188 - +0.2
244,188 - +1.4
244,214 - +0.2
244,215 + +0.4
244,554 - EX31_RS01120 0.18 +1.3
244,563 + EX31_RS01120 0.19 -0.4
244,595 + EX31_RS01120 0.22 +2.8
244,782 + EX31_RS01120 0.37 -1.4
244,783 - EX31_RS01120 0.37 -0.8
244,783 - EX31_RS01120 0.37 +2.2
244,792 - EX31_RS01120 0.38 +1.0
244,860 + EX31_RS01120 0.43 +1.0

Or see this region's nucleotide sequence