Strain Fitness in Rahnella sp. WP5 around EX31_RS00425

Experiment: Sucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS00420 and EX31_RS00425 are separated by 0 nucleotidesEX31_RS00425 and EX31_RS00430 overlap by 4 nucleotides EX31_RS00420: EX31_RS00420 - LacI family DNA-binding transcriptional regulator, at 88,831 to 89,886 _RS00420 EX31_RS00425: EX31_RS00425 - sucrose-6-phosphate hydrolase, at 89,887 to 91,296 _RS00425 EX31_RS00430: EX31_RS00430 - PTS sucrose transporter subunit IIBC, at 91,293 to 92,666 _RS00430 Position (kb) 89 90 91 92Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 89.010 kb on - strand, within EX31_RS00420at 89.010 kb on - strand, within EX31_RS00420at 89.010 kb on - strand, within EX31_RS00420at 89.010 kb on - strand, within EX31_RS00420at 89.068 kb on - strand, within EX31_RS00420at 89.068 kb on - strand, within EX31_RS00420at 89.068 kb on - strand, within EX31_RS00420at 89.068 kb on - strand, within EX31_RS00420at 89.181 kb on - strand, within EX31_RS00420at 89.181 kb on - strand, within EX31_RS00420at 89.181 kb on - strand, within EX31_RS00420at 89.293 kb on - strand, within EX31_RS00420at 89.293 kb on - strand, within EX31_RS00420at 89.293 kb on - strand, within EX31_RS00420at 89.297 kb on + strand, within EX31_RS00420at 89.298 kb on - strand, within EX31_RS00420at 89.298 kb on - strand, within EX31_RS00420at 89.374 kb on - strand, within EX31_RS00420at 89.374 kb on - strand, within EX31_RS00420at 89.394 kb on + strand, within EX31_RS00420at 89.395 kb on - strand, within EX31_RS00420at 89.395 kb on - strand, within EX31_RS00420at 89.395 kb on - strand, within EX31_RS00420at 89.441 kb on + strand, within EX31_RS00420at 89.442 kb on - strand, within EX31_RS00420at 89.545 kb on - strand, within EX31_RS00420at 89.545 kb on - strand, within EX31_RS00420at 89.618 kb on + strand, within EX31_RS00420at 89.700 kb on - strand, within EX31_RS00420at 89.752 kb on - strand, within EX31_RS00420at 89.833 kb on - strandat 89.833 kb on - strandat 89.833 kb on - strandat 89.888 kb on + strandat 89.889 kb on - strandat 89.889 kb on - strandat 89.889 kb on - strandat 89.889 kb on - strandat 89.889 kb on - strandat 89.889 kb on - strandat 89.889 kb on - strandat 89.889 kb on - strandat 89.889 kb on - strandat 89.889 kb on - strandat 89.894 kb on - strandat 89.965 kb on + strandat 90.058 kb on + strand, within EX31_RS00425at 90.058 kb on + strand, within EX31_RS00425at 90.058 kb on + strand, within EX31_RS00425at 90.059 kb on - strand, within EX31_RS00425at 90.116 kb on - strand, within EX31_RS00425at 90.150 kb on + strand, within EX31_RS00425at 90.151 kb on - strand, within EX31_RS00425at 90.364 kb on + strand, within EX31_RS00425at 90.365 kb on - strand, within EX31_RS00425at 90.378 kb on - strand, within EX31_RS00425at 90.458 kb on + strand, within EX31_RS00425at 90.459 kb on - strand, within EX31_RS00425at 90.459 kb on - strand, within EX31_RS00425at 90.555 kb on + strand, within EX31_RS00425at 90.653 kb on + strand, within EX31_RS00425at 90.653 kb on + strand, within EX31_RS00425at 90.654 kb on - strand, within EX31_RS00425at 90.677 kb on - strand, within EX31_RS00425at 90.740 kb on - strand, within EX31_RS00425at 90.785 kb on + strand, within EX31_RS00425at 90.785 kb on + strand, within EX31_RS00425at 90.785 kb on + strand, within EX31_RS00425at 90.785 kb on + strand, within EX31_RS00425at 90.785 kb on + strand, within EX31_RS00425at 90.785 kb on + strand, within EX31_RS00425at 90.785 kb on + strand, within EX31_RS00425at 90.785 kb on + strand, within EX31_RS00425at 90.785 kb on + strand, within EX31_RS00425at 90.786 kb on - strand, within EX31_RS00425at 90.786 kb on - strand, within EX31_RS00425at 90.786 kb on - strand, within EX31_RS00425at 90.786 kb on - strand, within EX31_RS00425at 90.786 kb on - strand, within EX31_RS00425at 90.786 kb on - strand, within EX31_RS00425at 90.788 kb on - strand, within EX31_RS00425at 90.836 kb on + strand, within EX31_RS00425at 90.836 kb on + strand, within EX31_RS00425at 90.837 kb on - strand, within EX31_RS00425at 90.837 kb on - strand, within EX31_RS00425at 91.016 kb on + strand, within EX31_RS00425at 91.064 kb on - strand, within EX31_RS00425at 91.170 kb on + strandat 91.315 kb on + strandat 91.316 kb on - strandat 91.316 kb on - strandat 91.316 kb on - strandat 91.316 kb on - strandat 91.316 kb on - strandat 91.316 kb on - strandat 91.376 kb on - strandat 91.552 kb on - strand, within EX31_RS00430at 91.622 kb on - strand, within EX31_RS00430at 91.622 kb on - strand, within EX31_RS00430at 91.622 kb on - strand, within EX31_RS00430at 91.671 kb on - strand, within EX31_RS00430at 91.671 kb on - strand, within EX31_RS00430at 91.671 kb on - strand, within EX31_RS00430at 91.769 kb on - strand, within EX31_RS00430at 92.007 kb on + strand, within EX31_RS00430at 92.007 kb on + strand, within EX31_RS00430at 92.008 kb on - strand, within EX31_RS00430at 92.091 kb on - strand, within EX31_RS00430at 92.196 kb on - strand, within EX31_RS00430at 92.217 kb on - strand, within EX31_RS00430at 92.217 kb on - strand, within EX31_RS00430at 92.229 kb on - strand, within EX31_RS00430

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
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89,010 - EX31_RS00420 0.17 +0.1
89,010 - EX31_RS00420 0.17 -0.2
89,010 - EX31_RS00420 0.17 +0.5
89,010 - EX31_RS00420 0.17 +0.6
89,068 - EX31_RS00420 0.22 +0.6
89,068 - EX31_RS00420 0.22 +0.8
89,068 - EX31_RS00420 0.22 +1.2
89,068 - EX31_RS00420 0.22 -0.8
89,181 - EX31_RS00420 0.33 +0.2
89,181 - EX31_RS00420 0.33 +1.6
89,181 - EX31_RS00420 0.33 +1.2
89,293 - EX31_RS00420 0.44 +1.6
89,293 - EX31_RS00420 0.44 -0.4
89,293 - EX31_RS00420 0.44 -0.0
89,297 + EX31_RS00420 0.44 +1.4
89,298 - EX31_RS00420 0.44 +0.2
89,298 - EX31_RS00420 0.44 +0.9
89,374 - EX31_RS00420 0.51 +0.2
89,374 - EX31_RS00420 0.51 +0.8
89,394 + EX31_RS00420 0.53 +0.4
89,395 - EX31_RS00420 0.53 +1.2
89,395 - EX31_RS00420 0.53 +0.5
89,395 - EX31_RS00420 0.53 -1.6
89,441 + EX31_RS00420 0.58 -1.0
89,442 - EX31_RS00420 0.58 -0.2
89,545 - EX31_RS00420 0.68 -1.4
89,545 - EX31_RS00420 0.68 +1.7
89,618 + EX31_RS00420 0.75 +0.6
89,700 - EX31_RS00420 0.82 -0.4
89,752 - EX31_RS00420 0.87 +0.6
89,833 - -2.0
89,833 - +0.2
89,833 - +0.6
89,888 + -1.1
89,889 - -0.4
89,889 - +0.0
89,889 - +2.0
89,889 - +0.5
89,889 - -1.0
89,889 - +3.0
89,889 - -0.4
89,889 - -0.9
89,889 - -0.2
89,889 - -0.9
89,894 - +1.1
89,965 + -1.4
90,058 + EX31_RS00425 0.12 -0.6
90,058 + EX31_RS00425 0.12 -1.6
90,058 + EX31_RS00425 0.12 -1.6
90,059 - EX31_RS00425 0.12 -1.8
90,116 - EX31_RS00425 0.16 -1.1
90,150 + EX31_RS00425 0.19 +1.2
90,151 - EX31_RS00425 0.19 +1.6
90,364 + EX31_RS00425 0.34 -0.8
90,365 - EX31_RS00425 0.34 -2.6
90,378 - EX31_RS00425 0.35 -0.8
90,458 + EX31_RS00425 0.40 +1.2
90,459 - EX31_RS00425 0.41 -1.6
90,459 - EX31_RS00425 0.41 +1.2
90,555 + EX31_RS00425 0.47 -2.9
90,653 + EX31_RS00425 0.54 +1.2
90,653 + EX31_RS00425 0.54 -3.0
90,654 - EX31_RS00425 0.54 -2.1
90,677 - EX31_RS00425 0.56 -1.4
90,740 - EX31_RS00425 0.60 -1.2
90,785 + EX31_RS00425 0.64 +0.2
90,785 + EX31_RS00425 0.64 -0.4
90,785 + EX31_RS00425 0.64 -2.7
90,785 + EX31_RS00425 0.64 -0.4
90,785 + EX31_RS00425 0.64 -1.7
90,785 + EX31_RS00425 0.64 -1.1
90,785 + EX31_RS00425 0.64 -1.1
90,785 + EX31_RS00425 0.64 -2.9
90,785 + EX31_RS00425 0.64 -1.6
90,786 - EX31_RS00425 0.64 +0.2
90,786 - EX31_RS00425 0.64 +0.5
90,786 - EX31_RS00425 0.64 -1.6
90,786 - EX31_RS00425 0.64 -1.4
90,786 - EX31_RS00425 0.64 -1.8
90,786 - EX31_RS00425 0.64 -0.4
90,788 - EX31_RS00425 0.64 +1.2
90,836 + EX31_RS00425 0.67 -0.7
90,836 + EX31_RS00425 0.67 -0.6
90,837 - EX31_RS00425 0.67 -0.8
90,837 - EX31_RS00425 0.67 -1.8
91,016 + EX31_RS00425 0.80 -2.5
91,064 - EX31_RS00425 0.83 +1.2
91,170 + +0.2
91,315 + -0.5
91,316 - -0.9
91,316 - +0.2
91,316 - -0.4
91,316 - -0.6
91,316 - +0.2
91,316 - -1.4
91,376 - -1.5
91,552 - EX31_RS00430 0.19 -1.3
91,622 - EX31_RS00430 0.24 -0.6
91,622 - EX31_RS00430 0.24 -2.8
91,622 - EX31_RS00430 0.24 -1.7
91,671 - EX31_RS00430 0.28 -1.5
91,671 - EX31_RS00430 0.28 -1.1
91,671 - EX31_RS00430 0.28 -0.5
91,769 - EX31_RS00430 0.35 -1.3
92,007 + EX31_RS00430 0.52 -1.1
92,007 + EX31_RS00430 0.52 -0.6
92,008 - EX31_RS00430 0.52 -0.6
92,091 - EX31_RS00430 0.58 -1.1
92,196 - EX31_RS00430 0.66 -1.1
92,217 - EX31_RS00430 0.67 -2.8
92,217 - EX31_RS00430 0.67 -0.8
92,229 - EX31_RS00430 0.68 -0.4

Or see this region's nucleotide sequence