Strain Fitness in Rahnella sp. WP5 around EX31_RS00420

Experiment: Sucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS00415 and EX31_RS00420 are separated by 257 nucleotidesEX31_RS00420 and EX31_RS00425 are separated by 0 nucleotides EX31_RS00415: EX31_RS00415 - ABC transporter ATP-binding protein, at 87,755 to 88,573 _RS00415 EX31_RS00420: EX31_RS00420 - LacI family DNA-binding transcriptional regulator, at 88,831 to 89,886 _RS00420 EX31_RS00425: EX31_RS00425 - sucrose-6-phosphate hydrolase, at 89,887 to 91,296 _RS00425 Position (kb) 88 89 90Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 87.837 kb on + strand, within EX31_RS00415at 87.838 kb on - strand, within EX31_RS00415at 87.860 kb on + strand, within EX31_RS00415at 87.860 kb on + strand, within EX31_RS00415at 87.861 kb on - strand, within EX31_RS00415at 87.924 kb on - strand, within EX31_RS00415at 87.944 kb on - strand, within EX31_RS00415at 87.944 kb on - strand, within EX31_RS00415at 87.997 kb on + strand, within EX31_RS00415at 87.998 kb on - strand, within EX31_RS00415at 88.232 kb on + strand, within EX31_RS00415at 88.233 kb on - strand, within EX31_RS00415at 88.349 kb on - strand, within EX31_RS00415at 88.550 kb on - strandat 88.670 kb on + strandat 88.670 kb on + strandat 88.670 kb on + strandat 88.671 kb on - strandat 88.671 kb on - strandat 88.671 kb on - strandat 88.792 kb on + strandat 88.792 kb on + strandat 88.793 kb on - strandat 88.828 kb on + strandat 88.829 kb on - strandat 88.832 kb on + strandat 89.010 kb on - strand, within EX31_RS00420at 89.010 kb on - strand, within EX31_RS00420at 89.010 kb on - strand, within EX31_RS00420at 89.010 kb on - strand, within EX31_RS00420at 89.068 kb on - strand, within EX31_RS00420at 89.068 kb on - strand, within EX31_RS00420at 89.068 kb on - strand, within EX31_RS00420at 89.068 kb on - strand, within EX31_RS00420at 89.181 kb on - strand, within EX31_RS00420at 89.181 kb on - strand, within EX31_RS00420at 89.181 kb on - strand, within EX31_RS00420at 89.293 kb on - strand, within EX31_RS00420at 89.293 kb on - strand, within EX31_RS00420at 89.293 kb on - strand, within EX31_RS00420at 89.297 kb on + strand, within EX31_RS00420at 89.298 kb on - strand, within EX31_RS00420at 89.298 kb on - strand, within EX31_RS00420at 89.374 kb on - strand, within EX31_RS00420at 89.374 kb on - strand, within EX31_RS00420at 89.394 kb on + strand, within EX31_RS00420at 89.395 kb on - strand, within EX31_RS00420at 89.395 kb on - strand, within EX31_RS00420at 89.395 kb on - strand, within EX31_RS00420at 89.441 kb on + strand, within EX31_RS00420at 89.442 kb on - strand, within EX31_RS00420at 89.545 kb on - strand, within EX31_RS00420at 89.545 kb on - strand, within EX31_RS00420at 89.618 kb on + strand, within EX31_RS00420at 89.700 kb on - strand, within EX31_RS00420at 89.752 kb on - strand, within EX31_RS00420at 89.833 kb on - strandat 89.833 kb on - strandat 89.833 kb on - strandat 89.888 kb on + strandat 89.889 kb on - strandat 89.889 kb on - strandat 89.889 kb on - strandat 89.889 kb on - strandat 89.889 kb on - strandat 89.889 kb on - strandat 89.889 kb on - strandat 89.889 kb on - strandat 89.889 kb on - strandat 89.889 kb on - strandat 89.894 kb on - strandat 89.965 kb on + strandat 90.058 kb on + strand, within EX31_RS00425at 90.058 kb on + strand, within EX31_RS00425at 90.058 kb on + strand, within EX31_RS00425at 90.059 kb on - strand, within EX31_RS00425at 90.116 kb on - strand, within EX31_RS00425at 90.150 kb on + strand, within EX31_RS00425at 90.151 kb on - strand, within EX31_RS00425at 90.364 kb on + strand, within EX31_RS00425at 90.365 kb on - strand, within EX31_RS00425at 90.378 kb on - strand, within EX31_RS00425at 90.458 kb on + strand, within EX31_RS00425at 90.459 kb on - strand, within EX31_RS00425at 90.459 kb on - strand, within EX31_RS00425at 90.555 kb on + strand, within EX31_RS00425at 90.653 kb on + strand, within EX31_RS00425at 90.653 kb on + strand, within EX31_RS00425at 90.654 kb on - strand, within EX31_RS00425at 90.677 kb on - strand, within EX31_RS00425at 90.740 kb on - strand, within EX31_RS00425at 90.785 kb on + strand, within EX31_RS00425at 90.785 kb on + strand, within EX31_RS00425at 90.785 kb on + strand, within EX31_RS00425at 90.785 kb on + strand, within EX31_RS00425at 90.785 kb on + strand, within EX31_RS00425at 90.785 kb on + strand, within EX31_RS00425at 90.785 kb on + strand, within EX31_RS00425at 90.785 kb on + strand, within EX31_RS00425at 90.785 kb on + strand, within EX31_RS00425at 90.786 kb on - strand, within EX31_RS00425at 90.786 kb on - strand, within EX31_RS00425at 90.786 kb on - strand, within EX31_RS00425at 90.786 kb on - strand, within EX31_RS00425at 90.786 kb on - strand, within EX31_RS00425at 90.786 kb on - strand, within EX31_RS00425at 90.788 kb on - strand, within EX31_RS00425at 90.836 kb on + strand, within EX31_RS00425at 90.836 kb on + strand, within EX31_RS00425at 90.837 kb on - strand, within EX31_RS00425at 90.837 kb on - strand, within EX31_RS00425

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
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87,837 + EX31_RS00415 0.10 -1.5
87,838 - EX31_RS00415 0.10 -1.1
87,860 + EX31_RS00415 0.13 -1.0
87,860 + EX31_RS00415 0.13 -0.6
87,861 - EX31_RS00415 0.13 +0.2
87,924 - EX31_RS00415 0.21 -0.1
87,944 - EX31_RS00415 0.23 +0.7
87,944 - EX31_RS00415 0.23 -0.0
87,997 + EX31_RS00415 0.30 -0.2
87,998 - EX31_RS00415 0.30 +0.6
88,232 + EX31_RS00415 0.58 -1.0
88,233 - EX31_RS00415 0.58 +0.5
88,349 - EX31_RS00415 0.73 +0.2
88,550 - +0.2
88,670 + -1.4
88,670 + +1.0
88,670 + -1.4
88,671 - -0.4
88,671 - +0.3
88,671 - +2.3
88,792 + +0.5
88,792 + +1.4
88,793 - -0.8
88,828 + +2.2
88,829 - +0.6
88,832 + -0.2
89,010 - EX31_RS00420 0.17 +0.1
89,010 - EX31_RS00420 0.17 -0.2
89,010 - EX31_RS00420 0.17 +0.5
89,010 - EX31_RS00420 0.17 +0.6
89,068 - EX31_RS00420 0.22 +0.6
89,068 - EX31_RS00420 0.22 +0.8
89,068 - EX31_RS00420 0.22 +1.2
89,068 - EX31_RS00420 0.22 -0.8
89,181 - EX31_RS00420 0.33 +0.2
89,181 - EX31_RS00420 0.33 +1.6
89,181 - EX31_RS00420 0.33 +1.2
89,293 - EX31_RS00420 0.44 +1.6
89,293 - EX31_RS00420 0.44 -0.4
89,293 - EX31_RS00420 0.44 -0.0
89,297 + EX31_RS00420 0.44 +1.4
89,298 - EX31_RS00420 0.44 +0.2
89,298 - EX31_RS00420 0.44 +0.9
89,374 - EX31_RS00420 0.51 +0.2
89,374 - EX31_RS00420 0.51 +0.8
89,394 + EX31_RS00420 0.53 +0.4
89,395 - EX31_RS00420 0.53 +1.2
89,395 - EX31_RS00420 0.53 +0.5
89,395 - EX31_RS00420 0.53 -1.6
89,441 + EX31_RS00420 0.58 -1.0
89,442 - EX31_RS00420 0.58 -0.2
89,545 - EX31_RS00420 0.68 -1.4
89,545 - EX31_RS00420 0.68 +1.7
89,618 + EX31_RS00420 0.75 +0.6
89,700 - EX31_RS00420 0.82 -0.4
89,752 - EX31_RS00420 0.87 +0.6
89,833 - -2.0
89,833 - +0.2
89,833 - +0.6
89,888 + -1.1
89,889 - -0.4
89,889 - +0.0
89,889 - +2.0
89,889 - +0.5
89,889 - -1.0
89,889 - +3.0
89,889 - -0.4
89,889 - -0.9
89,889 - -0.2
89,889 - -0.9
89,894 - +1.1
89,965 + -1.4
90,058 + EX31_RS00425 0.12 -0.6
90,058 + EX31_RS00425 0.12 -1.6
90,058 + EX31_RS00425 0.12 -1.6
90,059 - EX31_RS00425 0.12 -1.8
90,116 - EX31_RS00425 0.16 -1.1
90,150 + EX31_RS00425 0.19 +1.2
90,151 - EX31_RS00425 0.19 +1.6
90,364 + EX31_RS00425 0.34 -0.8
90,365 - EX31_RS00425 0.34 -2.6
90,378 - EX31_RS00425 0.35 -0.8
90,458 + EX31_RS00425 0.40 +1.2
90,459 - EX31_RS00425 0.41 -1.6
90,459 - EX31_RS00425 0.41 +1.2
90,555 + EX31_RS00425 0.47 -2.9
90,653 + EX31_RS00425 0.54 +1.2
90,653 + EX31_RS00425 0.54 -3.0
90,654 - EX31_RS00425 0.54 -2.1
90,677 - EX31_RS00425 0.56 -1.4
90,740 - EX31_RS00425 0.60 -1.2
90,785 + EX31_RS00425 0.64 +0.2
90,785 + EX31_RS00425 0.64 -0.4
90,785 + EX31_RS00425 0.64 -2.7
90,785 + EX31_RS00425 0.64 -0.4
90,785 + EX31_RS00425 0.64 -1.7
90,785 + EX31_RS00425 0.64 -1.1
90,785 + EX31_RS00425 0.64 -1.1
90,785 + EX31_RS00425 0.64 -2.9
90,785 + EX31_RS00425 0.64 -1.6
90,786 - EX31_RS00425 0.64 +0.2
90,786 - EX31_RS00425 0.64 +0.5
90,786 - EX31_RS00425 0.64 -1.6
90,786 - EX31_RS00425 0.64 -1.4
90,786 - EX31_RS00425 0.64 -1.8
90,786 - EX31_RS00425 0.64 -0.4
90,788 - EX31_RS00425 0.64 +1.2
90,836 + EX31_RS00425 0.67 -0.7
90,836 + EX31_RS00425 0.67 -0.6
90,837 - EX31_RS00425 0.67 -0.8
90,837 - EX31_RS00425 0.67 -1.8

Or see this region's nucleotide sequence