Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS21885

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS21875 and CA265_RS21880 are separated by 113 nucleotidesCA265_RS21880 and CA265_RS21885 are separated by 204 nucleotidesCA265_RS21885 and CA265_RS21890 are separated by 12 nucleotidesCA265_RS21890 and CA265_RS21895 are separated by 83 nucleotides CA265_RS21875: CA265_RS21875 - 1,4-dihydroxy-6-naphthoate synthase, at 5,374,508 to 5,375,356 _RS21875 CA265_RS21880: CA265_RS21880 - futalosine hydrolase, at 5,375,470 to 5,376,093 _RS21880 CA265_RS21885: CA265_RS21885 - 6-pyruvoyl tetrahydrobiopterin synthase, at 5,376,298 to 5,376,708 _RS21885 CA265_RS21890: CA265_RS21890 - GTP cyclohydrolase I FolE, at 5,376,721 to 5,377,356 _RS21890 CA265_RS21895: CA265_RS21895 - [acyl-carrier-protein] S-malonyltransferase, at 5,377,440 to 5,378,321 _RS21895 Position (kb) 5376 5377Strain fitness (log2 ratio) -3 -2 -1 0 1at 5375.440 kb on + strandat 5375.444 kb on + strandat 5375.457 kb on + strandat 5375.467 kb on + strandat 5376.099 kb on - strandat 5376.135 kb on + strandat 5376.149 kb on + strandat 5376.150 kb on - strandat 5376.152 kb on + strandat 5376.153 kb on - strandat 5376.189 kb on + strandat 5376.219 kb on - strandat 5376.222 kb on - strandat 5376.222 kb on - strandat 5376.391 kb on - strand, within CA265_RS21885at 5376.433 kb on + strand, within CA265_RS21885at 5376.438 kb on + strand, within CA265_RS21885at 5376.438 kb on + strand, within CA265_RS21885at 5376.439 kb on - strand, within CA265_RS21885at 5376.444 kb on + strand, within CA265_RS21885at 5376.485 kb on + strand, within CA265_RS21885at 5376.515 kb on - strand, within CA265_RS21885at 5376.522 kb on - strand, within CA265_RS21885at 5376.620 kb on + strand, within CA265_RS21885at 5376.620 kb on + strand, within CA265_RS21885

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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5,375,440 + -0.4
5,375,444 + +0.4
5,375,457 + +0.4
5,375,467 + -0.3
5,376,099 - +0.5
5,376,135 + -0.5
5,376,149 + -0.4
5,376,150 - -0.6
5,376,152 + -1.6
5,376,153 - +0.7
5,376,189 + -1.8
5,376,219 - -0.4
5,376,222 - -1.0
5,376,222 - +0.3
5,376,391 - CA265_RS21885 0.23 -0.6
5,376,433 + CA265_RS21885 0.33 -0.4
5,376,438 + CA265_RS21885 0.34 -0.7
5,376,438 + CA265_RS21885 0.34 -1.9
5,376,439 - CA265_RS21885 0.34 -3.5
5,376,444 + CA265_RS21885 0.36 -0.4
5,376,485 + CA265_RS21885 0.45 -1.7
5,376,515 - CA265_RS21885 0.53 -0.4
5,376,522 - CA265_RS21885 0.55 -3.6
5,376,620 + CA265_RS21885 0.78 -2.7
5,376,620 + CA265_RS21885 0.78 -0.6

Or see this region's nucleotide sequence