Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS21875 and CA265_RS21880 are separated by 113 nucleotides CA265_RS21880 and CA265_RS21885 are separated by 204 nucleotides CA265_RS21885 and CA265_RS21890 are separated by 12 nucleotides CA265_RS21890 and CA265_RS21895 are separated by 83 nucleotides
CA265_RS21875: CA265_RS21875 - 1,4-dihydroxy-6-naphthoate synthase, at 5,374,508 to 5,375,356
_RS21875
CA265_RS21880: CA265_RS21880 - futalosine hydrolase, at 5,375,470 to 5,376,093
_RS21880
CA265_RS21885: CA265_RS21885 - 6-pyruvoyl tetrahydrobiopterin synthase, at 5,376,298 to 5,376,708
_RS21885
CA265_RS21890: CA265_RS21890 - GTP cyclohydrolase I FolE, at 5,376,721 to 5,377,356
_RS21890
CA265_RS21895: CA265_RS21895 - [acyl-carrier-protein] S-malonyltransferase, at 5,377,440 to 5,378,321
_RS21895
Position (kb)
5376
5377 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 5375.440 kb on + strand at 5375.444 kb on + strand at 5375.457 kb on + strand at 5375.467 kb on + strand at 5376.099 kb on - strand at 5376.135 kb on + strand at 5376.149 kb on + strand at 5376.150 kb on - strand at 5376.152 kb on + strand at 5376.153 kb on - strand at 5376.189 kb on + strand at 5376.219 kb on - strand at 5376.222 kb on - strand at 5376.222 kb on - strand at 5376.391 kb on - strand, within CA265_RS21885 at 5376.433 kb on + strand, within CA265_RS21885 at 5376.438 kb on + strand, within CA265_RS21885 at 5376.438 kb on + strand, within CA265_RS21885 at 5376.439 kb on - strand, within CA265_RS21885 at 5376.444 kb on + strand, within CA265_RS21885 at 5376.485 kb on + strand, within CA265_RS21885 at 5376.515 kb on - strand, within CA265_RS21885 at 5376.522 kb on - strand, within CA265_RS21885 at 5376.620 kb on + strand, within CA265_RS21885 at 5376.620 kb on + strand, within CA265_RS21885
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 5,375,440 + -0.4 5,375,444 + +0.4 5,375,457 + +0.4 5,375,467 + -0.3 5,376,099 - +0.5 5,376,135 + -0.5 5,376,149 + -0.4 5,376,150 - -0.6 5,376,152 + -1.6 5,376,153 - +0.7 5,376,189 + -1.8 5,376,219 - -0.4 5,376,222 - -1.0 5,376,222 - +0.3 5,376,391 - CA265_RS21885 0.23 -0.6 5,376,433 + CA265_RS21885 0.33 -0.4 5,376,438 + CA265_RS21885 0.34 -0.7 5,376,438 + CA265_RS21885 0.34 -1.9 5,376,439 - CA265_RS21885 0.34 -3.5 5,376,444 + CA265_RS21885 0.36 -0.4 5,376,485 + CA265_RS21885 0.45 -1.7 5,376,515 - CA265_RS21885 0.53 -0.4 5,376,522 - CA265_RS21885 0.55 -3.6 5,376,620 + CA265_RS21885 0.78 -2.7 5,376,620 + CA265_RS21885 0.78 -0.6
Or see this region's nucleotide sequence