Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS21040

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS21035 and CA265_RS21040 overlap by 4 nucleotidesCA265_RS21040 and CA265_RS21045 are separated by 169 nucleotidesCA265_RS21045 and CA265_RS21050 overlap by 1 nucleotides CA265_RS21035: CA265_RS21035 - 3-oxoacyl-ACP synthase, at 5,181,487 to 5,182,563 _RS21035 CA265_RS21040: CA265_RS21040 - hypothetical protein, at 5,182,560 to 5,184,047 _RS21040 CA265_RS21045: CA265_RS21045 - hypothetical protein, at 5,184,217 to 5,184,960 _RS21045 CA265_RS21050: CA265_RS21050 - Nif3-like dinuclear metal center hexameric protein, at 5,184,960 to 5,186,057 _RS21050 Position (kb) 5182 5183 5184 5185Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5181.664 kb on + strand, within CA265_RS21035at 5181.684 kb on - strand, within CA265_RS21035at 5181.735 kb on + strand, within CA265_RS21035at 5181.736 kb on - strand, within CA265_RS21035at 5181.760 kb on - strand, within CA265_RS21035at 5181.760 kb on - strand, within CA265_RS21035at 5181.760 kb on - strand, within CA265_RS21035at 5181.762 kb on + strand, within CA265_RS21035at 5181.762 kb on + strand, within CA265_RS21035at 5181.814 kb on - strand, within CA265_RS21035at 5181.881 kb on - strand, within CA265_RS21035at 5181.935 kb on - strand, within CA265_RS21035at 5181.937 kb on + strand, within CA265_RS21035at 5181.938 kb on - strand, within CA265_RS21035at 5181.938 kb on - strand, within CA265_RS21035at 5181.966 kb on + strand, within CA265_RS21035at 5181.989 kb on + strand, within CA265_RS21035at 5182.020 kb on + strand, within CA265_RS21035at 5182.091 kb on + strand, within CA265_RS21035at 5182.092 kb on - strand, within CA265_RS21035at 5182.094 kb on + strand, within CA265_RS21035at 5182.131 kb on + strand, within CA265_RS21035at 5182.214 kb on - strand, within CA265_RS21035at 5182.294 kb on - strand, within CA265_RS21035at 5182.294 kb on - strand, within CA265_RS21035at 5182.298 kb on + strand, within CA265_RS21035at 5182.413 kb on - strand, within CA265_RS21035at 5182.448 kb on + strand, within CA265_RS21035at 5182.457 kb on + strandat 5182.520 kb on + strandat 5182.540 kb on - strandat 5182.540 kb on - strandat 5182.548 kb on + strandat 5182.643 kb on + strandat 5182.670 kb on + strandat 5182.743 kb on - strand, within CA265_RS21040at 5182.804 kb on + strand, within CA265_RS21040at 5182.805 kb on - strand, within CA265_RS21040at 5182.805 kb on - strand, within CA265_RS21040at 5182.838 kb on + strand, within CA265_RS21040at 5182.855 kb on + strand, within CA265_RS21040at 5182.855 kb on + strand, within CA265_RS21040at 5182.856 kb on - strand, within CA265_RS21040at 5182.882 kb on - strand, within CA265_RS21040at 5182.900 kb on - strand, within CA265_RS21040at 5182.996 kb on + strand, within CA265_RS21040at 5182.996 kb on + strand, within CA265_RS21040at 5182.996 kb on + strand, within CA265_RS21040at 5182.996 kb on + strand, within CA265_RS21040at 5182.997 kb on - strand, within CA265_RS21040at 5182.997 kb on - strand, within CA265_RS21040at 5183.000 kb on + strand, within CA265_RS21040at 5183.000 kb on + strand, within CA265_RS21040at 5183.001 kb on - strand, within CA265_RS21040at 5183.086 kb on + strand, within CA265_RS21040at 5183.087 kb on - strand, within CA265_RS21040at 5183.196 kb on + strand, within CA265_RS21040at 5183.197 kb on - strand, within CA265_RS21040at 5183.215 kb on + strand, within CA265_RS21040at 5183.277 kb on - strand, within CA265_RS21040at 5183.287 kb on + strand, within CA265_RS21040at 5183.287 kb on + strand, within CA265_RS21040at 5183.287 kb on + strand, within CA265_RS21040at 5183.288 kb on - strand, within CA265_RS21040at 5183.338 kb on + strand, within CA265_RS21040at 5183.338 kb on + strand, within CA265_RS21040at 5183.338 kb on + strand, within CA265_RS21040at 5183.339 kb on - strand, within CA265_RS21040at 5183.339 kb on - strand, within CA265_RS21040at 5183.370 kb on - strand, within CA265_RS21040at 5183.370 kb on - strand, within CA265_RS21040at 5183.388 kb on + strand, within CA265_RS21040at 5183.392 kb on + strand, within CA265_RS21040at 5183.392 kb on + strand, within CA265_RS21040at 5183.392 kb on + strand, within CA265_RS21040at 5183.472 kb on - strand, within CA265_RS21040at 5183.475 kb on + strand, within CA265_RS21040at 5183.514 kb on + strand, within CA265_RS21040at 5183.515 kb on - strand, within CA265_RS21040at 5183.526 kb on + strand, within CA265_RS21040at 5183.561 kb on + strand, within CA265_RS21040at 5183.580 kb on + strand, within CA265_RS21040at 5183.581 kb on - strand, within CA265_RS21040at 5183.642 kb on + strand, within CA265_RS21040at 5183.643 kb on - strand, within CA265_RS21040at 5183.643 kb on - strand, within CA265_RS21040at 5183.651 kb on + strand, within CA265_RS21040at 5183.651 kb on + strand, within CA265_RS21040at 5183.652 kb on - strand, within CA265_RS21040at 5183.701 kb on - strand, within CA265_RS21040at 5183.723 kb on - strand, within CA265_RS21040at 5183.728 kb on + strand, within CA265_RS21040at 5183.758 kb on - strand, within CA265_RS21040at 5183.758 kb on - strand, within CA265_RS21040at 5183.845 kb on + strand, within CA265_RS21040at 5183.874 kb on - strand, within CA265_RS21040at 5183.903 kb on + strandat 5183.904 kb on - strandat 5183.927 kb on + strandat 5183.938 kb on - strandat 5183.946 kb on - strandat 5183.989 kb on - strandat 5184.055 kb on + strandat 5184.057 kb on + strandat 5184.057 kb on + strandat 5184.058 kb on - strandat 5184.058 kb on - strandat 5184.058 kb on - strandat 5184.101 kb on - strandat 5184.112 kb on + strandat 5184.112 kb on + strandat 5184.113 kb on - strandat 5184.118 kb on - strandat 5184.198 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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5,181,664 + CA265_RS21035 0.16 -0.4
5,181,684 - CA265_RS21035 0.18 +0.5
5,181,735 + CA265_RS21035 0.23 -0.0
5,181,736 - CA265_RS21035 0.23 -0.4
5,181,760 - CA265_RS21035 0.25 +0.3
5,181,760 - CA265_RS21035 0.25 +0.5
5,181,760 - CA265_RS21035 0.25 -0.6
5,181,762 + CA265_RS21035 0.26 +0.8
5,181,762 + CA265_RS21035 0.26 +1.2
5,181,814 - CA265_RS21035 0.30 +0.3
5,181,881 - CA265_RS21035 0.37 +1.6
5,181,935 - CA265_RS21035 0.42 +0.2
5,181,937 + CA265_RS21035 0.42 -1.2
5,181,938 - CA265_RS21035 0.42 +0.3
5,181,938 - CA265_RS21035 0.42 +1.0
5,181,966 + CA265_RS21035 0.44 -1.2
5,181,989 + CA265_RS21035 0.47 -0.7
5,182,020 + CA265_RS21035 0.49 -1.2
5,182,091 + CA265_RS21035 0.56 -0.2
5,182,092 - CA265_RS21035 0.56 +0.1
5,182,094 + CA265_RS21035 0.56 -1.8
5,182,131 + CA265_RS21035 0.60 +0.4
5,182,214 - CA265_RS21035 0.68 +1.1
5,182,294 - CA265_RS21035 0.75 +1.1
5,182,294 - CA265_RS21035 0.75 -0.0
5,182,298 + CA265_RS21035 0.75 +0.5
5,182,413 - CA265_RS21035 0.86 -1.0
5,182,448 + CA265_RS21035 0.89 +2.0
5,182,457 + -0.9
5,182,520 + -2.0
5,182,540 - +0.6
5,182,540 - -2.1
5,182,548 + -0.9
5,182,643 + +1.3
5,182,670 + -0.2
5,182,743 - CA265_RS21040 0.12 -0.2
5,182,804 + CA265_RS21040 0.16 +0.4
5,182,805 - CA265_RS21040 0.16 -0.3
5,182,805 - CA265_RS21040 0.16 -1.5
5,182,838 + CA265_RS21040 0.19 +1.7
5,182,855 + CA265_RS21040 0.20 -0.5
5,182,855 + CA265_RS21040 0.20 +0.6
5,182,856 - CA265_RS21040 0.20 -1.4
5,182,882 - CA265_RS21040 0.22 -1.6
5,182,900 - CA265_RS21040 0.23 +0.5
5,182,996 + CA265_RS21040 0.29 -1.2
5,182,996 + CA265_RS21040 0.29 +0.5
5,182,996 + CA265_RS21040 0.29 -1.6
5,182,996 + CA265_RS21040 0.29 +0.4
5,182,997 - CA265_RS21040 0.29 -1.5
5,182,997 - CA265_RS21040 0.29 -0.4
5,183,000 + CA265_RS21040 0.30 +0.4
5,183,000 + CA265_RS21040 0.30 -1.0
5,183,001 - CA265_RS21040 0.30 +1.5
5,183,086 + CA265_RS21040 0.35 +1.1
5,183,087 - CA265_RS21040 0.35 -0.7
5,183,196 + CA265_RS21040 0.43 -0.6
5,183,197 - CA265_RS21040 0.43 -1.5
5,183,215 + CA265_RS21040 0.44 -0.0
5,183,277 - CA265_RS21040 0.48 +2.6
5,183,287 + CA265_RS21040 0.49 -0.1
5,183,287 + CA265_RS21040 0.49 +1.1
5,183,287 + CA265_RS21040 0.49 +0.0
5,183,288 - CA265_RS21040 0.49 +1.6
5,183,338 + CA265_RS21040 0.52 +0.5
5,183,338 + CA265_RS21040 0.52 -0.2
5,183,338 + CA265_RS21040 0.52 -0.2
5,183,339 - CA265_RS21040 0.52 +0.6
5,183,339 - CA265_RS21040 0.52 -1.9
5,183,370 - CA265_RS21040 0.54 -0.9
5,183,370 - CA265_RS21040 0.54 +0.4
5,183,388 + CA265_RS21040 0.56 -1.4
5,183,392 + CA265_RS21040 0.56 -1.6
5,183,392 + CA265_RS21040 0.56 -1.3
5,183,392 + CA265_RS21040 0.56 +1.0
5,183,472 - CA265_RS21040 0.61 -0.5
5,183,475 + CA265_RS21040 0.61 -0.2
5,183,514 + CA265_RS21040 0.64 +0.3
5,183,515 - CA265_RS21040 0.64 +0.3
5,183,526 + CA265_RS21040 0.65 -1.3
5,183,561 + CA265_RS21040 0.67 -0.6
5,183,580 + CA265_RS21040 0.69 -1.6
5,183,581 - CA265_RS21040 0.69 -0.4
5,183,642 + CA265_RS21040 0.73 -0.6
5,183,643 - CA265_RS21040 0.73 -0.0
5,183,643 - CA265_RS21040 0.73 +0.5
5,183,651 + CA265_RS21040 0.73 +0.5
5,183,651 + CA265_RS21040 0.73 -0.8
5,183,652 - CA265_RS21040 0.73 +0.4
5,183,701 - CA265_RS21040 0.77 -0.6
5,183,723 - CA265_RS21040 0.78 -2.5
5,183,728 + CA265_RS21040 0.78 -0.5
5,183,758 - CA265_RS21040 0.81 -0.9
5,183,758 - CA265_RS21040 0.81 +0.9
5,183,845 + CA265_RS21040 0.86 -1.0
5,183,874 - CA265_RS21040 0.88 -0.0
5,183,903 + -1.0
5,183,904 - +0.6
5,183,927 + -2.3
5,183,938 - -2.8
5,183,946 - -0.9
5,183,989 - +0.6
5,184,055 + +0.0
5,184,057 + -1.8
5,184,057 + -2.8
5,184,058 - -0.6
5,184,058 - +1.3
5,184,058 - -0.5
5,184,101 - -0.3
5,184,112 + -2.1
5,184,112 + +2.0
5,184,113 - -0.2
5,184,118 - +1.0
5,184,198 - -1.1

Or see this region's nucleotide sequence