Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03555 and CA265_RS03560 are separated by 89 nucleotides CA265_RS03560 and CA265_RS03565 are separated by 128 nucleotides CA265_RS03565 and CA265_RS03570 are separated by 1 nucleotides CA265_RS03570 and CA265_RS03575 are separated by 51 nucleotides
CA265_RS03555: CA265_RS03555 - molecular chaperone DnaJ, at 853,458 to 854,621
_RS03555
CA265_RS03560: CA265_RS03560 - nucleotide exchange factor GrpE, at 854,711 to 855,292
_RS03560
CA265_RS03565: CA265_RS03565 - phosphonate ABC transporter ATP-binding protein, at 855,421 to 856,104
_RS03565
CA265_RS03570: CA265_RS03570 - hypothetical protein, at 856,106 to 856,309
_RS03570
CA265_RS03575: CA265_RS03575 - hypothetical protein, at 856,361 to 858,310
_RS03575
Position (kb) 855
856
857 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 854.702 kb on - strand at 855.287 kb on - strand at 855.368 kb on - strand at 855.424 kb on + strand at 855.465 kb on + strand at 855.633 kb on - strand, within CA265_RS03565 at 855.649 kb on - strand, within CA265_RS03565 at 855.702 kb on + strand, within CA265_RS03565 at 855.709 kb on + strand, within CA265_RS03565 at 855.913 kb on - strand, within CA265_RS03565 at 855.933 kb on + strand, within CA265_RS03565 at 855.933 kb on + strand, within CA265_RS03565 at 855.934 kb on - strand, within CA265_RS03565 at 855.937 kb on + strand, within CA265_RS03565 at 855.937 kb on + strand, within CA265_RS03565 at 855.937 kb on + strand, within CA265_RS03565 at 855.948 kb on - strand, within CA265_RS03565 at 855.948 kb on - strand, within CA265_RS03565 at 855.952 kb on + strand, within CA265_RS03565 at 855.953 kb on - strand, within CA265_RS03565 at 855.995 kb on - strand, within CA265_RS03565 at 856.046 kb on - strand at 856.107 kb on + strand at 856.413 kb on + strand at 856.425 kb on + strand at 856.462 kb on + strand at 856.483 kb on + strand at 856.484 kb on - strand at 856.500 kb on - strand at 856.500 kb on - strand at 856.502 kb on + strand at 856.530 kb on - strand at 856.580 kb on + strand, within CA265_RS03575 at 856.671 kb on - strand, within CA265_RS03575 at 856.688 kb on + strand, within CA265_RS03575 at 856.696 kb on - strand, within CA265_RS03575 at 856.699 kb on + strand, within CA265_RS03575 at 856.699 kb on + strand, within CA265_RS03575 at 856.774 kb on - strand, within CA265_RS03575 at 856.805 kb on + strand, within CA265_RS03575 at 856.826 kb on + strand, within CA265_RS03575 at 856.827 kb on - strand, within CA265_RS03575 at 856.872 kb on - strand, within CA265_RS03575 at 856.872 kb on - strand, within CA265_RS03575 at 856.927 kb on + strand, within CA265_RS03575 at 856.930 kb on - strand, within CA265_RS03575 at 856.933 kb on + strand, within CA265_RS03575 at 857.088 kb on - strand, within CA265_RS03575 at 857.096 kb on + strand, within CA265_RS03575
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 854,702 - -0.6 855,287 - -1.0 855,368 - +1.2 855,424 + +0.0 855,465 + -0.2 855,633 - CA265_RS03565 0.31 -0.3 855,649 - CA265_RS03565 0.33 -0.3 855,702 + CA265_RS03565 0.41 -1.1 855,709 + CA265_RS03565 0.42 -2.7 855,913 - CA265_RS03565 0.72 -2.5 855,933 + CA265_RS03565 0.75 -2.0 855,933 + CA265_RS03565 0.75 -1.4 855,934 - CA265_RS03565 0.75 -0.9 855,937 + CA265_RS03565 0.75 -0.4 855,937 + CA265_RS03565 0.75 -0.9 855,937 + CA265_RS03565 0.75 +1.8 855,948 - CA265_RS03565 0.77 -0.9 855,948 - CA265_RS03565 0.77 -2.3 855,952 + CA265_RS03565 0.78 +0.0 855,953 - CA265_RS03565 0.78 -1.0 855,995 - CA265_RS03565 0.84 -1.9 856,046 - -0.7 856,107 + -1.6 856,413 + -0.8 856,425 + -0.4 856,462 + +1.5 856,483 + +0.4 856,484 - -0.5 856,500 - -1.1 856,500 - +0.7 856,502 + +0.6 856,530 - +1.6 856,580 + CA265_RS03575 0.11 +0.6 856,671 - CA265_RS03575 0.16 -0.6 856,688 + CA265_RS03575 0.17 +0.7 856,696 - CA265_RS03575 0.17 -0.3 856,699 + CA265_RS03575 0.17 -2.5 856,699 + CA265_RS03575 0.17 -2.2 856,774 - CA265_RS03575 0.21 +0.6 856,805 + CA265_RS03575 0.23 +1.4 856,826 + CA265_RS03575 0.24 -1.1 856,827 - CA265_RS03575 0.24 +2.1 856,872 - CA265_RS03575 0.26 -1.8 856,872 - CA265_RS03575 0.26 -1.7 856,927 + CA265_RS03575 0.29 -2.9 856,930 - CA265_RS03575 0.29 +0.1 856,933 + CA265_RS03575 0.29 -1.9 857,088 - CA265_RS03575 0.37 -0.1 857,096 + CA265_RS03575 0.38 +0.7
Or see this region's nucleotide sequence