Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS02990

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS02980 and CA265_RS02985 are separated by 176 nucleotidesCA265_RS02985 and CA265_RS02990 are separated by 261 nucleotidesCA265_RS02990 and CA265_RS02995 are separated by 79 nucleotides CA265_RS02980: CA265_RS02980 - hypothetical protein, at 743,206 to 743,757 _RS02980 CA265_RS02985: CA265_RS02985 - hypothetical protein, at 743,934 to 744,488 _RS02985 CA265_RS02990: CA265_RS02990 - mannosyltransferase, at 744,750 to 745,859 _RS02990 CA265_RS02995: CA265_RS02995 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 745,939 to 746,760 _RS02995 Position (kb) 744 745 746Strain fitness (log2 ratio) -3 -2 -1 0 1at 743.760 kb on - strandat 743.793 kb on - strandat 743.799 kb on - strandat 743.802 kb on + strandat 743.803 kb on - strandat 743.827 kb on - strandat 743.899 kb on + strandat 743.903 kb on + strandat 743.984 kb on - strandat 743.993 kb on + strand, within CA265_RS02985at 743.994 kb on - strand, within CA265_RS02985at 744.076 kb on + strand, within CA265_RS02985at 744.096 kb on - strand, within CA265_RS02985at 744.222 kb on + strand, within CA265_RS02985at 744.222 kb on + strand, within CA265_RS02985at 744.235 kb on - strand, within CA265_RS02985at 744.238 kb on - strand, within CA265_RS02985at 744.238 kb on - strand, within CA265_RS02985at 744.300 kb on + strand, within CA265_RS02985at 744.301 kb on - strand, within CA265_RS02985at 744.301 kb on - strand, within CA265_RS02985at 744.315 kb on - strand, within CA265_RS02985at 744.315 kb on - strand, within CA265_RS02985at 744.330 kb on - strand, within CA265_RS02985at 744.429 kb on + strand, within CA265_RS02985at 744.430 kb on - strand, within CA265_RS02985at 744.440 kb on - strandat 744.440 kb on - strandat 744.448 kb on + strandat 744.473 kb on + strandat 744.539 kb on - strandat 744.602 kb on + strandat 744.637 kb on - strandat 744.637 kb on - strandat 744.637 kb on - strandat 744.639 kb on + strandat 744.640 kb on - strandat 744.647 kb on - strandat 744.747 kb on + strandat 744.913 kb on + strand, within CA265_RS02990at 744.913 kb on + strand, within CA265_RS02990at 744.914 kb on - strand, within CA265_RS02990at 744.915 kb on + strand, within CA265_RS02990at 744.982 kb on + strand, within CA265_RS02990at 744.983 kb on - strand, within CA265_RS02990at 745.054 kb on + strand, within CA265_RS02990at 745.096 kb on - strand, within CA265_RS02990at 745.126 kb on - strand, within CA265_RS02990at 745.260 kb on + strand, within CA265_RS02990at 745.265 kb on - strand, within CA265_RS02990at 745.328 kb on + strand, within CA265_RS02990at 745.352 kb on - strand, within CA265_RS02990at 745.493 kb on + strand, within CA265_RS02990at 745.498 kb on + strand, within CA265_RS02990at 745.498 kb on + strand, within CA265_RS02990at 745.521 kb on + strand, within CA265_RS02990at 745.522 kb on - strand, within CA265_RS02990at 745.557 kb on - strand, within CA265_RS02990at 745.564 kb on - strand, within CA265_RS02990at 745.677 kb on - strand, within CA265_RS02990at 745.729 kb on - strandat 745.801 kb on + strandat 745.810 kb on - strandat 745.851 kb on + strandat 745.852 kb on - strandat 745.866 kb on + strandat 745.887 kb on + strandat 745.888 kb on - strandat 745.888 kb on - strandat 745.889 kb on + strandat 745.940 kb on + strandat 745.954 kb on - strandat 746.853 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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743,760 - +0.5
743,793 - +0.3
743,799 - +0.6
743,802 + +0.1
743,803 - +0.2
743,827 - -0.1
743,899 + +0.0
743,903 + +0.2
743,984 - +0.5
743,993 + CA265_RS02985 0.11 -0.4
743,994 - CA265_RS02985 0.11 +0.2
744,076 + CA265_RS02985 0.26 -2.0
744,096 - CA265_RS02985 0.29 +0.6
744,222 + CA265_RS02985 0.52 -0.3
744,222 + CA265_RS02985 0.52 +0.1
744,235 - CA265_RS02985 0.54 +0.7
744,238 - CA265_RS02985 0.55 +0.2
744,238 - CA265_RS02985 0.55 +0.1
744,300 + CA265_RS02985 0.66 +0.3
744,301 - CA265_RS02985 0.66 -0.6
744,301 - CA265_RS02985 0.66 -2.1
744,315 - CA265_RS02985 0.69 -0.4
744,315 - CA265_RS02985 0.69 +0.3
744,330 - CA265_RS02985 0.71 +0.5
744,429 + CA265_RS02985 0.89 +0.7
744,430 - CA265_RS02985 0.89 +0.1
744,440 - -2.1
744,440 - -0.9
744,448 + -0.7
744,473 + +1.7
744,539 - +0.4
744,602 + +1.4
744,637 - -0.6
744,637 - -0.5
744,637 - -1.0
744,639 + -0.6
744,640 - -0.3
744,647 - +0.4
744,747 + -0.3
744,913 + CA265_RS02990 0.15 -1.3
744,913 + CA265_RS02990 0.15 -0.9
744,914 - CA265_RS02990 0.15 -1.8
744,915 + CA265_RS02990 0.15 -0.9
744,982 + CA265_RS02990 0.21 +0.3
744,983 - CA265_RS02990 0.21 -1.7
745,054 + CA265_RS02990 0.27 +0.7
745,096 - CA265_RS02990 0.31 -1.6
745,126 - CA265_RS02990 0.34 -1.2
745,260 + CA265_RS02990 0.46 -1.0
745,265 - CA265_RS02990 0.46 -1.0
745,328 + CA265_RS02990 0.52 -2.8
745,352 - CA265_RS02990 0.54 -1.6
745,493 + CA265_RS02990 0.67 -2.7
745,498 + CA265_RS02990 0.67 -2.4
745,498 + CA265_RS02990 0.67 -0.6
745,521 + CA265_RS02990 0.69 -1.4
745,522 - CA265_RS02990 0.70 -1.8
745,557 - CA265_RS02990 0.73 -1.8
745,564 - CA265_RS02990 0.73 -0.4
745,677 - CA265_RS02990 0.84 -1.4
745,729 - +1.7
745,801 + -0.7
745,810 - -1.7
745,851 + -0.5
745,852 - -0.9
745,866 + +0.4
745,887 + +1.2
745,888 - +1.4
745,888 - +1.1
745,889 + -2.8
745,940 + -2.3
745,954 - -1.1
746,853 + -0.9

Or see this region's nucleotide sequence