Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33890

Experiment: Nickel (II) chloride 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nickel (II) chloride 1 mM
3,194,226	+				+0.3
3,194,227	-				+0.9
3,194,237	+				+0.8
3,194,237	+				+1.3
3,194,238	-				+1.0
3,194,372	+				+1.2
3,194,373	-				+0.4
3,194,394	+				+1.4
3,194,878	-				-0.4
3,194,878	-				+0.7
3,195,404	-		BPHYT_RS33890	0.20	+1.2
3,195,404	-		BPHYT_RS33890	0.20	+0.9
3,195,470	-				+0.3
3,195,532	-		BPHYT_RS33890	0.27	+0.9
3,195,532	-		BPHYT_RS33890	0.27	+0.8
3,195,532	-		BPHYT_RS33890	0.27	+1.0
3,195,532	-		BPHYT_RS33890	0.27	+1.8
3,196,005	+		BPHYT_RS33890	0.52	+1.3
3,196,006	-		BPHYT_RS33890	0.52	+1.1
3,196,257	+		BPHYT_RS33890	0.65	+1.0
3,196,258	-		BPHYT_RS33890	0.65	+0.4
3,196,293	+		BPHYT_RS33890	0.67	+0.7
3,196,483	-		BPHYT_RS33890	0.77	+0.5
3,196,483	-		BPHYT_RS33890	0.77	+1.3
3,196,500	+		BPHYT_RS33890	0.78	+1.4
3,196,501	-		BPHYT_RS33890	0.78	-0.8
3,196,501	-		BPHYT_RS33890	0.78	+0.7
3,196,764	+				+1.4
3,196,894	-				+0.7
3,196,981	-				-0.3
3,196,981	-				+0.2
3,197,037	+				+0.2
3,197,060	-				+0.8
3,197,060	-				-0.3
3,197,064	+				+1.3
3,197,065	-				-0.1