Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS31305 and BPHYT_RS31310 are separated by 94 nucleotides BPHYT_RS31310 and BPHYT_RS31315 are separated by 245 nucleotides BPHYT_RS31315 and BPHYT_RS31320 are separated by 71 nucleotides BPHYT_RS31320 and BPHYT_RS31325 are separated by 37 nucleotides BPHYT_RS31325 and BPHYT_RS31330 are separated by 60 nucleotides
BPHYT_RS31305: BPHYT_RS31305 - alcohol dehydrogenase, at 2,582,248 to 2,583,234
_RS31305
BPHYT_RS31310: BPHYT_RS31310 - hypothetical protein, at 2,583,329 to 2,583,604
_RS31310
BPHYT_RS31315: BPHYT_RS31315 - cytochrome C, at 2,583,850 to 2,584,185
_RS31315
BPHYT_RS31320: BPHYT_RS31320 - hypothetical protein, at 2,584,257 to 2,584,631
_RS31320
BPHYT_RS31325: BPHYT_RS31325 - hypothetical protein, at 2,584,669 to 2,585,100
_RS31325
BPHYT_RS31330: BPHYT_RS31330 - MerR family transcriptional regulator, at 2,585,161 to 2,585,466
_RS31330
Position (kb)
2583
2584
2585 Strain fitness (log2 ratio)
-1
0
1 at 2583.221 kb on - strand at 2583.734 kb on - strand at 2584.195 kb on + strand at 2584.220 kb on + strand at 2584.412 kb on + strand, within BPHYT_RS31320 at 2585.121 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 2,583,221 - -0.9 2,583,734 - -0.3 2,584,195 + +0.1 2,584,220 + +1.3 2,584,412 + BPHYT_RS31320 0.41 -0.0 2,585,121 - -0.6
Or see this region's nucleotide sequence