Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30895

Experiment: Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS30885 and BPHYT_RS30890 are separated by 52 nucleotidesBPHYT_RS30890 and BPHYT_RS30895 are separated by 128 nucleotidesBPHYT_RS30895 and BPHYT_RS30900 are separated by 417 nucleotides BPHYT_RS30885: BPHYT_RS30885 - hypothetical protein, at 2,483,931 to 2,484,239 _RS30885 BPHYT_RS30890: BPHYT_RS30890 - hypothetical protein, at 2,484,292 to 2,485,062 _RS30890 BPHYT_RS30895: BPHYT_RS30895 - hypothetical protein, at 2,485,191 to 2,485,400 _RS30895 BPHYT_RS30900: BPHYT_RS30900 - transcriptional regulator, at 2,485,818 to 2,486,450 _RS30900 Position (kb) 2485 2486Strain fitness (log2 ratio) -1 0 1at 2484.723 kb on + strand, within BPHYT_RS30890at 2485.600 kb on - strandat 2485.984 kb on - strand, within BPHYT_RS30900at 2485.987 kb on - strand, within BPHYT_RS30900at 2486.150 kb on - strand, within BPHYT_RS30900

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
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2,484,723 + BPHYT_RS30890 0.56 +1.1
2,485,600 - -0.1
2,485,984 - BPHYT_RS30900 0.26 -0.2
2,485,987 - BPHYT_RS30900 0.27 -0.2
2,486,150 - BPHYT_RS30900 0.52 -1.1

Or see this region's nucleotide sequence