Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23980

Experiment: Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23975 and BPHYT_RS23980 are separated by 37 nucleotidesBPHYT_RS23980 and BPHYT_RS23985 are separated by 98 nucleotides BPHYT_RS23975: BPHYT_RS23975 - peroxidase, at 944,120 to 945,424 _RS23975 BPHYT_RS23980: BPHYT_RS23980 - hypothetical protein, at 945,462 to 946,625 _RS23980 BPHYT_RS23985: BPHYT_RS23985 - carbohydrate porin, at 946,724 to 948,247 _RS23985 Position (kb) 945 946 947Strain fitness (log2 ratio) -2 -1 0 1at 944.616 kb on + strand, within BPHYT_RS23975at 944.871 kb on + strandat 945.044 kb on + strand, within BPHYT_RS23975at 945.212 kb on - strand, within BPHYT_RS23975at 945.429 kb on - strandat 945.506 kb on - strandat 945.598 kb on + strand, within BPHYT_RS23980at 945.599 kb on - strand, within BPHYT_RS23980at 946.315 kb on + strand, within BPHYT_RS23980at 946.316 kb on - strand, within BPHYT_RS23980at 946.316 kb on - strand, within BPHYT_RS23980at 946.822 kb on - strandat 946.869 kb on + strandat 946.869 kb on + strandat 946.869 kb on + strandat 947.269 kb on - strand, within BPHYT_RS23985at 947.286 kb on + strand, within BPHYT_RS23985at 947.286 kb on + strand, within BPHYT_RS23985at 947.545 kb on - strand, within BPHYT_RS23985at 947.595 kb on + strand, within BPHYT_RS23985

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
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944,616 + BPHYT_RS23975 0.38 +1.6
944,871 + -1.8
945,044 + BPHYT_RS23975 0.71 -0.2
945,212 - BPHYT_RS23975 0.84 +0.1
945,429 - +0.9
945,506 - +1.2
945,598 + BPHYT_RS23980 0.12 +0.5
945,599 - BPHYT_RS23980 0.12 +0.2
946,315 + BPHYT_RS23980 0.73 +0.1
946,316 - BPHYT_RS23980 0.73 +0.5
946,316 - BPHYT_RS23980 0.73 +1.2
946,822 - -0.4
946,869 + -0.7
946,869 + -0.2
946,869 + -0.7
947,269 - BPHYT_RS23985 0.36 -1.8
947,286 + BPHYT_RS23985 0.37 -1.4
947,286 + BPHYT_RS23985 0.37 -1.0
947,545 - BPHYT_RS23985 0.54 -1.6
947,595 + BPHYT_RS23985 0.57 -1.3

Or see this region's nucleotide sequence