Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23755 and BPHYT_RS23760 overlap by 23 nucleotides BPHYT_RS23760 and BPHYT_RS23765 overlap by 11 nucleotides BPHYT_RS23765 and BPHYT_RS23770 are separated by 82 nucleotides BPHYT_RS23770 and BPHYT_RS23775 are separated by 56 nucleotides
BPHYT_RS23755: BPHYT_RS23755 - phosphonate ABC transporter ATP-binding protein, at 896,723 to 897,823
_RS23755
BPHYT_RS23760: BPHYT_RS23760 - phosphonate ABC transporter permease, at 897,801 to 898,757
_RS23760
BPHYT_RS23765: BPHYT_RS23765 - phosphonate ABC transporter permease, at 898,747 to 899,610
_RS23765
BPHYT_RS23770: BPHYT_RS23770 - GntR family transcriptional regulator, at 899,693 to 900,427
_RS23770
BPHYT_RS23775: BPHYT_RS23775 - phosphonoacetate hydrolase, at 900,484 to 901,773
_RS23775
Position (kb) 898
899
900 Strain fitness (log2 ratio) -2
-1
0
1 at 898.047 kb on + strand, within BPHYT_RS23760 at 898.617 kb on + strand, within BPHYT_RS23760 at 898.618 kb on - strand, within BPHYT_RS23760 at 898.707 kb on + strand at 898.789 kb on - strand at 899.453 kb on - strand, within BPHYT_RS23765 at 899.512 kb on + strand, within BPHYT_RS23765 at 899.512 kb on + strand, within BPHYT_RS23765 at 899.512 kb on + strand, within BPHYT_RS23765 at 899.662 kb on + strand at 899.662 kb on + strand at 899.663 kb on - strand at 899.663 kb on - strand at 900.111 kb on - strand, within BPHYT_RS23770 at 900.173 kb on + strand, within BPHYT_RS23770 at 900.397 kb on - strand at 900.448 kb on + strand at 900.492 kb on + strand at 900.500 kb on + strand at 900.500 kb on + strand at 900.500 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 898,047 + BPHYT_RS23760 0.26 -0.5 898,617 + BPHYT_RS23760 0.85 -0.3 898,618 - BPHYT_RS23760 0.85 -0.0 898,707 + -2.0 898,789 - -0.1 899,453 - BPHYT_RS23765 0.82 +0.2 899,512 + BPHYT_RS23765 0.89 -0.7 899,512 + BPHYT_RS23765 0.89 -1.0 899,512 + BPHYT_RS23765 0.89 -1.1 899,662 + +0.1 899,662 + -0.8 899,663 - +0.5 899,663 - -0.1 900,111 - BPHYT_RS23770 0.57 +0.8 900,173 + BPHYT_RS23770 0.65 -1.1 900,397 - -0.4 900,448 + -0.4 900,492 + -0.1 900,500 + +0.0 900,500 + +0.5 900,500 + -1.2
Or see this region's nucleotide sequence