Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23385

Experiment: Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23380 and BPHYT_RS23385 are separated by 21 nucleotidesBPHYT_RS23385 and BPHYT_RS23390 are separated by 518 nucleotides BPHYT_RS23380: BPHYT_RS23380 - hypothetical protein, at 806,789 to 807,697 _RS23380 BPHYT_RS23385: BPHYT_RS23385 - group 1 glycosyl transferase, at 807,719 to 808,894 _RS23385 BPHYT_RS23390: BPHYT_RS23390 - hypothetical protein, at 809,413 to 810,423 _RS23390 Position (kb) 807 808 809Strain fitness (log2 ratio) -1 0 1at 807.185 kb on + strand, within BPHYT_RS23380at 807.186 kb on - strand, within BPHYT_RS23380at 807.186 kb on - strand, within BPHYT_RS23380at 808.627 kb on - strand, within BPHYT_RS23385at 809.518 kb on + strand, within BPHYT_RS23390

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
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807,185 + BPHYT_RS23380 0.44 +0.8
807,186 - BPHYT_RS23380 0.44 +0.3
807,186 - BPHYT_RS23380 0.44 -0.3
808,627 - BPHYT_RS23385 0.77 -0.4
809,518 + BPHYT_RS23390 0.10 +0.4

Or see this region's nucleotide sequence