Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21530 and BPHYT_RS21535 are separated by 12 nucleotides BPHYT_RS21535 and BPHYT_RS21540 are separated by 2 nucleotides BPHYT_RS21540 and BPHYT_RS21545 are separated by 92 nucleotides BPHYT_RS21545 and BPHYT_RS21550 are separated by 168 nucleotides
BPHYT_RS21530: BPHYT_RS21530 - RNA polymerase subunit sigma-24, at 391,439 to 391,993
_RS21530
BPHYT_RS21535: BPHYT_RS21535 - hypothetical protein, at 392,006 to 392,314
_RS21535
BPHYT_RS21540: BPHYT_RS21540 - 4Fe-4S ferredoxin, at 392,317 to 392,613
_RS21540
BPHYT_RS21545: BPHYT_RS21545 - SAM-dependent methyltransferase, at 392,706 to 393,422
_RS21545
BPHYT_RS21550: BPHYT_RS21550 - hypothetical protein, at 393,591 to 394,109
_RS21550
Position (kb) 392
393 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 391.912 kb on + strand, within BPHYT_RS21530 at 391.913 kb on - strand, within BPHYT_RS21530 at 392.361 kb on - strand, within BPHYT_RS21540 at 392.627 kb on + strand at 392.669 kb on - strand at 392.705 kb on + strand at 392.829 kb on + strand, within BPHYT_RS21545 at 392.964 kb on - strand, within BPHYT_RS21545 at 393.095 kb on + strand, within BPHYT_RS21545 at 393.144 kb on + strand, within BPHYT_RS21545 at 393.144 kb on + strand, within BPHYT_RS21545 at 393.224 kb on - strand, within BPHYT_RS21545 at 393.238 kb on - strand, within BPHYT_RS21545 at 393.285 kb on - strand, within BPHYT_RS21545 at 393.306 kb on + strand, within BPHYT_RS21545 at 393.306 kb on + strand, within BPHYT_RS21545 at 393.306 kb on + strand, within BPHYT_RS21545 at 393.333 kb on + strand, within BPHYT_RS21545
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 391,912 + BPHYT_RS21530 0.85 -0.2 391,913 - BPHYT_RS21530 0.85 +0.6 392,361 - BPHYT_RS21540 0.15 +0.6 392,627 + +0.3 392,669 - -0.4 392,705 + -0.6 392,829 + BPHYT_RS21545 0.17 -0.6 392,964 - BPHYT_RS21545 0.36 -0.0 393,095 + BPHYT_RS21545 0.54 +0.0 393,144 + BPHYT_RS21545 0.61 -0.4 393,144 + BPHYT_RS21545 0.61 -0.0 393,224 - BPHYT_RS21545 0.72 -0.4 393,238 - BPHYT_RS21545 0.74 -0.2 393,285 - BPHYT_RS21545 0.81 -0.2 393,306 + BPHYT_RS21545 0.84 -0.3 393,306 + BPHYT_RS21545 0.84 -0.3 393,306 + BPHYT_RS21545 0.84 -3.1 393,333 + BPHYT_RS21545 0.87 -0.1
Or see this region's nucleotide sequence