Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20290 and BPHYT_RS20295 overlap by 4 nucleotides BPHYT_RS20295 and BPHYT_RS20300 are separated by 415 nucleotides
BPHYT_RS20290: BPHYT_RS20290 - LysR family transcriptional regulator, at 111,631 to 112,569
_RS20290
BPHYT_RS20295: BPHYT_RS20295 - ligand-gated channel, at 112,566 to 114,749
_RS20295
BPHYT_RS20300: BPHYT_RS20300 - isocitrate dehydrogenase, at 115,165 to 117,393
_RS20300
Position (kb) 112
113
114
115 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 111.826 kb on + strand, within BPHYT_RS20290 at 111.829 kb on + strand, within BPHYT_RS20290 at 112.368 kb on - strand, within BPHYT_RS20290 at 112.621 kb on + strand at 112.621 kb on + strand at 112.625 kb on - strand at 112.792 kb on + strand, within BPHYT_RS20295 at 112.793 kb on - strand, within BPHYT_RS20295 at 112.793 kb on - strand, within BPHYT_RS20295 at 112.879 kb on + strand, within BPHYT_RS20295 at 113.051 kb on - strand, within BPHYT_RS20295 at 113.051 kb on - strand, within BPHYT_RS20295 at 113.056 kb on + strand, within BPHYT_RS20295 at 113.164 kb on + strand, within BPHYT_RS20295 at 113.215 kb on + strand, within BPHYT_RS20295 at 113.216 kb on - strand, within BPHYT_RS20295 at 113.216 kb on - strand, within BPHYT_RS20295 at 113.216 kb on - strand, within BPHYT_RS20295 at 113.225 kb on - strand, within BPHYT_RS20295 at 113.291 kb on - strand, within BPHYT_RS20295 at 113.321 kb on - strand, within BPHYT_RS20295 at 113.343 kb on - strand, within BPHYT_RS20295 at 113.379 kb on - strand, within BPHYT_RS20295 at 113.379 kb on - strand, within BPHYT_RS20295 at 113.379 kb on - strand, within BPHYT_RS20295 at 113.379 kb on - strand, within BPHYT_RS20295 at 113.509 kb on + strand, within BPHYT_RS20295 at 113.510 kb on - strand, within BPHYT_RS20295 at 113.539 kb on + strand, within BPHYT_RS20295 at 113.638 kb on + strand, within BPHYT_RS20295 at 113.639 kb on - strand, within BPHYT_RS20295 at 113.639 kb on - strand, within BPHYT_RS20295 at 113.644 kb on + strand, within BPHYT_RS20295 at 113.644 kb on + strand, within BPHYT_RS20295 at 113.663 kb on - strand, within BPHYT_RS20295 at 113.825 kb on - strand, within BPHYT_RS20295 at 113.935 kb on + strand, within BPHYT_RS20295 at 114.136 kb on + strand, within BPHYT_RS20295 at 114.187 kb on + strand, within BPHYT_RS20295 at 114.187 kb on + strand, within BPHYT_RS20295 at 114.188 kb on - strand, within BPHYT_RS20295 at 114.188 kb on - strand, within BPHYT_RS20295 at 114.220 kb on + strand, within BPHYT_RS20295 at 114.419 kb on - strand, within BPHYT_RS20295 at 114.419 kb on - strand, within BPHYT_RS20295 at 114.844 kb on - strand at 114.868 kb on + strand at 114.923 kb on - strand at 114.937 kb on - strand at 114.937 kb on - strand at 115.026 kb on - strand at 115.041 kb on + strand at 115.043 kb on + strand at 115.137 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 111,826 + BPHYT_RS20290 0.21 -0.3 111,829 + BPHYT_RS20290 0.21 -1.3 112,368 - BPHYT_RS20290 0.78 -1.4 112,621 + -2.1 112,621 + -1.6 112,625 - -2.7 112,792 + BPHYT_RS20295 0.10 -2.0 112,793 - BPHYT_RS20295 0.10 -1.4 112,793 - BPHYT_RS20295 0.10 -1.5 112,879 + BPHYT_RS20295 0.14 -1.7 113,051 - BPHYT_RS20295 0.22 -1.1 113,051 - BPHYT_RS20295 0.22 -2.1 113,056 + BPHYT_RS20295 0.22 -1.8 113,164 + BPHYT_RS20295 0.27 -1.8 113,215 + BPHYT_RS20295 0.30 -1.8 113,216 - BPHYT_RS20295 0.30 -1.3 113,216 - BPHYT_RS20295 0.30 -2.7 113,216 - BPHYT_RS20295 0.30 -2.2 113,225 - BPHYT_RS20295 0.30 -1.6 113,291 - BPHYT_RS20295 0.33 -1.4 113,321 - BPHYT_RS20295 0.35 -1.3 113,343 - BPHYT_RS20295 0.36 -1.9 113,379 - BPHYT_RS20295 0.37 -1.5 113,379 - BPHYT_RS20295 0.37 -1.5 113,379 - BPHYT_RS20295 0.37 -1.1 113,379 - BPHYT_RS20295 0.37 -0.7 113,509 + BPHYT_RS20295 0.43 -1.3 113,510 - BPHYT_RS20295 0.43 -2.1 113,539 + BPHYT_RS20295 0.45 -2.4 113,638 + BPHYT_RS20295 0.49 -2.3 113,639 - BPHYT_RS20295 0.49 -2.7 113,639 - BPHYT_RS20295 0.49 -1.2 113,644 + BPHYT_RS20295 0.49 -1.9 113,644 + BPHYT_RS20295 0.49 -1.4 113,663 - BPHYT_RS20295 0.50 -0.8 113,825 - BPHYT_RS20295 0.58 -2.8 113,935 + BPHYT_RS20295 0.63 -2.3 114,136 + BPHYT_RS20295 0.72 -2.1 114,187 + BPHYT_RS20295 0.74 -2.0 114,187 + BPHYT_RS20295 0.74 -3.0 114,188 - BPHYT_RS20295 0.74 -1.1 114,188 - BPHYT_RS20295 0.74 -1.7 114,220 + BPHYT_RS20295 0.76 -1.9 114,419 - BPHYT_RS20295 0.85 -3.5 114,419 - BPHYT_RS20295 0.85 -1.9 114,844 - +1.3 114,868 + -0.8 114,923 - +1.2 114,937 - +2.4 114,937 - +2.8 115,026 - +0.9 115,041 + -0.1 115,043 + -1.8 115,137 + -0.3
Or see this region's nucleotide sequence