Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20230

Experiment: Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20225 and BPHYT_RS20230 overlap by 4 nucleotidesBPHYT_RS20230 and BPHYT_RS20235 overlap by 4 nucleotides BPHYT_RS20225: BPHYT_RS20225 - taurine catabolism dioxygenase tauD/tfdA, at 81,933 to 82,967 _RS20225 BPHYT_RS20230: BPHYT_RS20230 - ABC transporter, at 82,964 to 83,830 _RS20230 BPHYT_RS20235: BPHYT_RS20235 - iron ABC transporter, at 83,827 to 85,935 _RS20235 Position (kb) 82 83 84Strain fitness (log2 ratio) -1 0 1at 82.029 kb on + strandat 82.097 kb on - strand, within BPHYT_RS20225at 82.176 kb on + strand, within BPHYT_RS20225at 82.221 kb on + strand, within BPHYT_RS20225at 82.222 kb on - strand, within BPHYT_RS20225at 82.222 kb on - strand, within BPHYT_RS20225at 82.279 kb on - strand, within BPHYT_RS20225at 82.302 kb on - strand, within BPHYT_RS20225at 82.645 kb on + strand, within BPHYT_RS20225at 82.729 kb on - strand, within BPHYT_RS20225at 82.729 kb on - strand, within BPHYT_RS20225at 82.914 kb on + strandat 82.915 kb on - strandat 83.809 kb on - strandat 83.884 kb on + strandat 84.160 kb on - strand, within BPHYT_RS20235at 84.427 kb on + strand, within BPHYT_RS20235

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
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82,029 + +0.4
82,097 - BPHYT_RS20225 0.16 +0.0
82,176 + BPHYT_RS20225 0.23 +0.2
82,221 + BPHYT_RS20225 0.28 +0.5
82,222 - BPHYT_RS20225 0.28 -0.2
82,222 - BPHYT_RS20225 0.28 -0.3
82,279 - BPHYT_RS20225 0.33 -0.3
82,302 - BPHYT_RS20225 0.36 -0.9
82,645 + BPHYT_RS20225 0.69 -0.2
82,729 - BPHYT_RS20225 0.77 +0.2
82,729 - BPHYT_RS20225 0.77 +1.3
82,914 + +0.5
82,915 - +1.1
83,809 - +0.4
83,884 + +0.6
84,160 - BPHYT_RS20235 0.16 +1.2
84,427 + BPHYT_RS20235 0.28 +0.3

Or see this region's nucleotide sequence