Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18270

Experiment: Nickel (II) chloride 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nickel (II) chloride 1 mM
4,107,196	+		BPHYT_RS18260	0.56	+0.0
4,107,196	+		BPHYT_RS18260	0.56	-0.7
4,107,196	+		BPHYT_RS18260	0.56	-0.2
4,107,196	+		BPHYT_RS18260	0.56	+0.2
4,107,197	-		BPHYT_RS18260	0.56	-1.4
4,107,283	+		BPHYT_RS18260	0.67	-0.4
4,107,283	+		BPHYT_RS18260	0.67	-0.5
4,107,547	+				+0.4
4,107,740	+		BPHYT_RS18265	0.33	+0.9
4,107,740	+		BPHYT_RS18265	0.33	-0.7
4,107,741	-		BPHYT_RS18265	0.33	-0.7
4,108,092	-				-1.0
4,108,103	+				-0.8
4,108,104	-				-1.4
4,108,110	-				-1.4
4,108,215	+				-1.1
4,108,256	+		BPHYT_RS18270	0.13	+0.1
4,108,284	+		BPHYT_RS18270	0.16	-0.7
4,108,470	+		BPHYT_RS18270	0.33	-0.1
4,108,470	+		BPHYT_RS18270	0.33	-0.5
4,108,470	+		BPHYT_RS18270	0.33	-0.7
4,108,470	+		BPHYT_RS18270	0.33	-0.9
4,108,470	+		BPHYT_RS18270	0.33	-0.6
4,108,471	-		BPHYT_RS18270	0.33	-1.0
4,108,471	-		BPHYT_RS18270	0.33	-0.4
4,108,471	-		BPHYT_RS18270	0.33	-1.1
4,108,712	+		BPHYT_RS18270	0.55	-1.0
4,108,712	+		BPHYT_RS18270	0.55	-0.7
4,108,910	+		BPHYT_RS18270	0.73	-0.5
4,108,910	+		BPHYT_RS18270	0.73	-0.7
4,108,971	+		BPHYT_RS18270	0.79	-1.1
4,109,025	+		BPHYT_RS18270	0.84	-1.3
4,109,025	+				-1.5
4,109,026	-		BPHYT_RS18270	0.84	-0.5
4,109,261	+				-0.0
4,109,261	+				-0.3
4,109,466	+		BPHYT_RS18275	0.15	-0.8
4,109,646	+		BPHYT_RS18275	0.37	-0.4
4,109,646	+		BPHYT_RS18275	0.37	+0.5
4,109,646	+		BPHYT_RS18275	0.37	-0.1
4,109,647	-		BPHYT_RS18275	0.37	-2.5
4,110,158	+				-2.1
4,110,158	+				-0.7
4,110,158	+				-0.5
4,110,159	-				+1.1
4,110,171	+				+0.9
4,110,172	-				-0.7