Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS17525 and BPHYT_RS17530 are separated by 43 nucleotides BPHYT_RS17530 and BPHYT_RS17535 are separated by 160 nucleotides BPHYT_RS17535 and BPHYT_RS17540 are separated by 87 nucleotides
BPHYT_RS17525: BPHYT_RS17525 - glutaredoxin, at 3,969,313 to 3,969,624
_RS17525
BPHYT_RS17530: BPHYT_RS17530 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 3,969,668 to 3,970,267
_RS17530
BPHYT_RS17535: BPHYT_RS17535 - extradiol ring-cleavage dioxygenase class III protein subunit B, at 3,970,428 to 3,971,213
_RS17535
BPHYT_RS17540: BPHYT_RS17540 - L-aspartate/L-glutamate/L-glutamine:H+ symporter (from data) , at 3,971,301 to 3,972,896
_RS17540
Position (kb)
3970
3971
3972 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3969.536 kb on - strand, within BPHYT_RS17525 at 3969.583 kb on + strand, within BPHYT_RS17525 at 3969.584 kb on - strand, within BPHYT_RS17525 at 3969.734 kb on + strand, within BPHYT_RS17530 at 3969.817 kb on + strand, within BPHYT_RS17530 at 3969.818 kb on - strand, within BPHYT_RS17530 at 3969.818 kb on - strand, within BPHYT_RS17530 at 3970.090 kb on + strand, within BPHYT_RS17530 at 3970.090 kb on + strand, within BPHYT_RS17530 at 3970.146 kb on - strand, within BPHYT_RS17530 at 3970.266 kb on - strand at 3970.266 kb on - strand at 3970.299 kb on + strand at 3970.372 kb on + strand at 3970.372 kb on + strand at 3970.372 kb on + strand at 3970.372 kb on + strand at 3970.372 kb on + strand at 3970.372 kb on + strand at 3970.372 kb on + strand at 3970.373 kb on - strand at 3970.373 kb on - strand at 3970.373 kb on - strand at 3970.373 kb on - strand at 3970.373 kb on - strand at 3970.373 kb on - strand at 3970.374 kb on + strand at 3970.375 kb on - strand at 3970.375 kb on - strand at 3970.381 kb on - strand at 3970.393 kb on + strand at 3970.393 kb on + strand at 3970.393 kb on + strand at 3970.394 kb on - strand at 3970.394 kb on - strand at 3970.439 kb on - strand at 3970.647 kb on + strand, within BPHYT_RS17535 at 3970.659 kb on + strand, within BPHYT_RS17535 at 3970.660 kb on - strand, within BPHYT_RS17535 at 3970.660 kb on - strand, within BPHYT_RS17535 at 3970.801 kb on + strand, within BPHYT_RS17535 at 3970.801 kb on + strand, within BPHYT_RS17535 at 3971.136 kb on + strand at 3971.166 kb on + strand at 3971.166 kb on + strand at 3971.166 kb on + strand at 3971.167 kb on - strand at 3971.167 kb on - strand at 3971.193 kb on + strand at 3971.194 kb on - strand at 3971.194 kb on - strand at 3971.194 kb on - strand at 3971.194 kb on - strand at 3971.198 kb on - strand at 3971.198 kb on - strand at 3971.198 kb on - strand at 3971.211 kb on + strand at 3971.225 kb on - strand at 3971.233 kb on + strand at 3971.234 kb on - strand at 3971.234 kb on - strand at 3971.302 kb on + strand at 3971.392 kb on + strand at 3971.392 kb on + strand at 3971.392 kb on + strand at 3971.393 kb on - strand at 3971.393 kb on - strand at 3971.393 kb on - strand at 3971.393 kb on - strand at 3971.507 kb on - strand, within BPHYT_RS17540 at 3971.507 kb on - strand, within BPHYT_RS17540 at 3971.575 kb on + strand, within BPHYT_RS17540 at 3971.645 kb on - strand, within BPHYT_RS17540 at 3971.944 kb on + strand, within BPHYT_RS17540 at 3971.971 kb on + strand, within BPHYT_RS17540 at 3971.971 kb on + strand, within BPHYT_RS17540 at 3971.971 kb on + strand, within BPHYT_RS17540 at 3971.972 kb on - strand, within BPHYT_RS17540 at 3972.013 kb on + strand, within BPHYT_RS17540 at 3972.014 kb on - strand, within BPHYT_RS17540 at 3972.014 kb on - strand, within BPHYT_RS17540 at 3972.130 kb on + strand, within BPHYT_RS17540 at 3972.130 kb on + strand, within BPHYT_RS17540 at 3972.130 kb on + strand, within BPHYT_RS17540 at 3972.131 kb on - strand, within BPHYT_RS17540 at 3972.151 kb on + strand, within BPHYT_RS17540 at 3972.151 kb on + strand, within BPHYT_RS17540 at 3972.151 kb on + strand, within BPHYT_RS17540 at 3972.152 kb on - strand, within BPHYT_RS17540 at 3972.152 kb on - strand, within BPHYT_RS17540
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 3,969,536 - BPHYT_RS17525 0.71 -0.5 3,969,583 + BPHYT_RS17525 0.87 -0.4 3,969,584 - BPHYT_RS17525 0.87 -1.0 3,969,734 + BPHYT_RS17530 0.11 -1.1 3,969,817 + BPHYT_RS17530 0.25 -0.8 3,969,818 - BPHYT_RS17530 0.25 -1.4 3,969,818 - BPHYT_RS17530 0.25 -1.0 3,970,090 + BPHYT_RS17530 0.70 -2.3 3,970,090 + BPHYT_RS17530 0.70 -1.4 3,970,146 - BPHYT_RS17530 0.80 -1.4 3,970,266 - +0.0 3,970,266 - -0.2 3,970,299 + +2.0 3,970,372 + -1.7 3,970,372 + -0.5 3,970,372 + +0.5 3,970,372 + -0.1 3,970,372 + +0.6 3,970,372 + +0.3 3,970,372 + -0.5 3,970,373 - +0.1 3,970,373 - -0.2 3,970,373 - -1.1 3,970,373 - +0.2 3,970,373 - +0.4 3,970,373 - -0.7 3,970,374 + -0.4 3,970,375 - +0.3 3,970,375 - -0.4 3,970,381 - +0.1 3,970,393 + +0.0 3,970,393 + -0.3 3,970,393 + -0.6 3,970,394 - -0.3 3,970,394 - -0.3 3,970,439 - -0.1 3,970,647 + BPHYT_RS17535 0.28 -0.0 3,970,659 + BPHYT_RS17535 0.29 +0.2 3,970,660 - BPHYT_RS17535 0.30 -3.2 3,970,660 - BPHYT_RS17535 0.30 -0.2 3,970,801 + BPHYT_RS17535 0.47 +0.5 3,970,801 + BPHYT_RS17535 0.47 +1.3 3,971,136 + -0.5 3,971,166 + -0.5 3,971,166 + +0.1 3,971,166 + -0.1 3,971,167 - -0.3 3,971,167 - +0.1 3,971,193 + -0.3 3,971,194 - +0.5 3,971,194 - -0.4 3,971,194 - -0.9 3,971,194 - +0.9 3,971,198 - +0.3 3,971,198 - -0.0 3,971,198 - +0.2 3,971,211 + -0.2 3,971,225 - +0.0 3,971,233 + -0.2 3,971,234 - +0.9 3,971,234 - +0.2 3,971,302 + +0.2 3,971,392 + -0.5 3,971,392 + -1.7 3,971,392 + -0.9 3,971,393 - -0.2 3,971,393 - -0.5 3,971,393 - -0.5 3,971,393 - -0.7 3,971,507 - BPHYT_RS17540 0.13 +0.9 3,971,507 - BPHYT_RS17540 0.13 -0.8 3,971,575 + BPHYT_RS17540 0.17 -1.5 3,971,645 - BPHYT_RS17540 0.22 -0.6 3,971,944 + BPHYT_RS17540 0.40 -0.7 3,971,971 + BPHYT_RS17540 0.42 -1.5 3,971,971 + BPHYT_RS17540 0.42 -0.6 3,971,971 + BPHYT_RS17540 0.42 -0.7 3,971,972 - BPHYT_RS17540 0.42 +0.1 3,972,013 + BPHYT_RS17540 0.45 -0.1 3,972,014 - BPHYT_RS17540 0.45 -0.9 3,972,014 - BPHYT_RS17540 0.45 +1.1 3,972,130 + BPHYT_RS17540 0.52 -0.8 3,972,130 + BPHYT_RS17540 0.52 -0.5 3,972,130 + BPHYT_RS17540 0.52 -2.0 3,972,131 - BPHYT_RS17540 0.52 -1.0 3,972,151 + BPHYT_RS17540 0.53 +0.1 3,972,151 + BPHYT_RS17540 0.53 -1.5 3,972,151 + BPHYT_RS17540 0.53 -0.2 3,972,152 - BPHYT_RS17540 0.53 -0.2 3,972,152 - BPHYT_RS17540 0.53 +0.6
Or see this region's nucleotide sequence