Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17535

Experiment: Nickel (II) chloride 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nickel (II) chloride 1 mM
3,969,536	-		BPHYT_RS17525	0.71	-0.5
3,969,583	+		BPHYT_RS17525	0.87	-0.4
3,969,584	-		BPHYT_RS17525	0.87	-1.0
3,969,734	+		BPHYT_RS17530	0.11	-1.1
3,969,817	+		BPHYT_RS17530	0.25	-0.8
3,969,818	-		BPHYT_RS17530	0.25	-1.4
3,969,818	-		BPHYT_RS17530	0.25	-1.0
3,970,090	+		BPHYT_RS17530	0.70	-2.3
3,970,090	+		BPHYT_RS17530	0.70	-1.4
3,970,146	-		BPHYT_RS17530	0.80	-1.4
3,970,266	-				+0.0
3,970,266	-				-0.2
3,970,299	+				+2.0
3,970,372	+				-1.7
3,970,372	+				-0.5
3,970,372	+				+0.5
3,970,372	+				-0.1
3,970,372	+				+0.6
3,970,372	+				+0.3
3,970,372	+				-0.5
3,970,373	-				+0.1
3,970,373	-				-0.2
3,970,373	-				-1.1
3,970,373	-				+0.2
3,970,373	-				+0.4
3,970,373	-				-0.7
3,970,374	+				-0.4
3,970,375	-				+0.3
3,970,375	-				-0.4
3,970,381	-				+0.1
3,970,393	+				+0.0
3,970,393	+				-0.3
3,970,393	+				-0.6
3,970,394	-				-0.3
3,970,394	-				-0.3
3,970,439	-				-0.1
3,970,647	+		BPHYT_RS17535	0.28	-0.0
3,970,659	+		BPHYT_RS17535	0.29	+0.2
3,970,660	-		BPHYT_RS17535	0.30	-3.2
3,970,660	-		BPHYT_RS17535	0.30	-0.2
3,970,801	+		BPHYT_RS17535	0.47	+0.5
3,970,801	+		BPHYT_RS17535	0.47	+1.3
3,971,136	+				-0.5
3,971,166	+				-0.5
3,971,166	+				+0.1
3,971,166	+				-0.1
3,971,167	-				-0.3
3,971,167	-				+0.1
3,971,193	+				-0.3
3,971,194	-				+0.5
3,971,194	-				-0.4
3,971,194	-				-0.9
3,971,194	-				+0.9
3,971,198	-				+0.3
3,971,198	-				-0.0
3,971,198	-				+0.2
3,971,211	+				-0.2
3,971,225	-				+0.0
3,971,233	+				-0.2
3,971,234	-				+0.9
3,971,234	-				+0.2
3,971,302	+				+0.2
3,971,392	+				-0.5
3,971,392	+				-1.7
3,971,392	+				-0.9
3,971,393	-				-0.2
3,971,393	-				-0.5
3,971,393	-				-0.5
3,971,393	-				-0.7
3,971,507	-		BPHYT_RS17540	0.13	+0.9
3,971,507	-		BPHYT_RS17540	0.13	-0.8
3,971,575	+		BPHYT_RS17540	0.17	-1.5
3,971,645	-		BPHYT_RS17540	0.22	-0.6
3,971,944	+		BPHYT_RS17540	0.40	-0.7
3,971,971	+		BPHYT_RS17540	0.42	-1.5
3,971,971	+		BPHYT_RS17540	0.42	-0.6
3,971,971	+		BPHYT_RS17540	0.42	-0.7
3,971,972	-		BPHYT_RS17540	0.42	+0.1
3,972,013	+		BPHYT_RS17540	0.45	-0.1
3,972,014	-		BPHYT_RS17540	0.45	-0.9
3,972,014	-		BPHYT_RS17540	0.45	+1.1
3,972,130	+		BPHYT_RS17540	0.52	-0.8
3,972,130	+		BPHYT_RS17540	0.52	-0.5
3,972,130	+		BPHYT_RS17540	0.52	-2.0
3,972,131	-		BPHYT_RS17540	0.52	-1.0
3,972,151	+		BPHYT_RS17540	0.53	+0.1
3,972,151	+		BPHYT_RS17540	0.53	-1.5
3,972,151	+		BPHYT_RS17540	0.53	-0.2
3,972,152	-		BPHYT_RS17540	0.53	-0.2
3,972,152	-		BPHYT_RS17540	0.53	+0.6