Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17535

Experiment: Nickel (II) chloride 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS17525 and BPHYT_RS17530 are separated by 43 nucleotidesBPHYT_RS17530 and BPHYT_RS17535 are separated by 160 nucleotidesBPHYT_RS17535 and BPHYT_RS17540 are separated by 87 nucleotides BPHYT_RS17525: BPHYT_RS17525 - glutaredoxin, at 3,969,313 to 3,969,624 _RS17525 BPHYT_RS17530: BPHYT_RS17530 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 3,969,668 to 3,970,267 _RS17530 BPHYT_RS17535: BPHYT_RS17535 - extradiol ring-cleavage dioxygenase class III protein subunit B, at 3,970,428 to 3,971,213 _RS17535 BPHYT_RS17540: BPHYT_RS17540 - L-aspartate/L-glutamate/L-glutamine:H+ symporter (from data), at 3,971,301 to 3,972,896 _RS17540 Position (kb) 3970 3971 3972Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3969.536 kb on - strand, within BPHYT_RS17525at 3969.583 kb on + strand, within BPHYT_RS17525at 3969.584 kb on - strand, within BPHYT_RS17525at 3969.734 kb on + strand, within BPHYT_RS17530at 3969.817 kb on + strand, within BPHYT_RS17530at 3969.818 kb on - strand, within BPHYT_RS17530at 3969.818 kb on - strand, within BPHYT_RS17530at 3970.090 kb on + strand, within BPHYT_RS17530at 3970.090 kb on + strand, within BPHYT_RS17530at 3970.146 kb on - strand, within BPHYT_RS17530at 3970.266 kb on - strandat 3970.266 kb on - strandat 3970.299 kb on + strandat 3970.372 kb on + strandat 3970.372 kb on + strandat 3970.372 kb on + strandat 3970.372 kb on + strandat 3970.372 kb on + strandat 3970.372 kb on + strandat 3970.372 kb on + strandat 3970.373 kb on - strandat 3970.373 kb on - strandat 3970.373 kb on - strandat 3970.373 kb on - strandat 3970.373 kb on - strandat 3970.373 kb on - strandat 3970.374 kb on + strandat 3970.375 kb on - strandat 3970.375 kb on - strandat 3970.381 kb on - strandat 3970.393 kb on + strandat 3970.393 kb on + strandat 3970.393 kb on + strandat 3970.394 kb on - strandat 3970.394 kb on - strandat 3970.439 kb on - strandat 3970.647 kb on + strand, within BPHYT_RS17535at 3970.659 kb on + strand, within BPHYT_RS17535at 3970.660 kb on - strand, within BPHYT_RS17535at 3970.660 kb on - strand, within BPHYT_RS17535at 3970.801 kb on + strand, within BPHYT_RS17535at 3970.801 kb on + strand, within BPHYT_RS17535at 3971.136 kb on + strandat 3971.166 kb on + strandat 3971.166 kb on + strandat 3971.166 kb on + strandat 3971.167 kb on - strandat 3971.167 kb on - strandat 3971.193 kb on + strandat 3971.194 kb on - strandat 3971.194 kb on - strandat 3971.194 kb on - strandat 3971.194 kb on - strandat 3971.198 kb on - strandat 3971.198 kb on - strandat 3971.198 kb on - strandat 3971.211 kb on + strandat 3971.225 kb on - strandat 3971.233 kb on + strandat 3971.234 kb on - strandat 3971.234 kb on - strandat 3971.302 kb on + strandat 3971.392 kb on + strandat 3971.392 kb on + strandat 3971.392 kb on + strandat 3971.393 kb on - strandat 3971.393 kb on - strandat 3971.393 kb on - strandat 3971.393 kb on - strandat 3971.507 kb on - strand, within BPHYT_RS17540at 3971.507 kb on - strand, within BPHYT_RS17540at 3971.575 kb on + strand, within BPHYT_RS17540at 3971.645 kb on - strand, within BPHYT_RS17540at 3971.944 kb on + strand, within BPHYT_RS17540at 3971.971 kb on + strand, within BPHYT_RS17540at 3971.971 kb on + strand, within BPHYT_RS17540at 3971.971 kb on + strand, within BPHYT_RS17540at 3971.972 kb on - strand, within BPHYT_RS17540at 3972.013 kb on + strand, within BPHYT_RS17540at 3972.014 kb on - strand, within BPHYT_RS17540at 3972.014 kb on - strand, within BPHYT_RS17540at 3972.130 kb on + strand, within BPHYT_RS17540at 3972.130 kb on + strand, within BPHYT_RS17540at 3972.130 kb on + strand, within BPHYT_RS17540at 3972.131 kb on - strand, within BPHYT_RS17540at 3972.151 kb on + strand, within BPHYT_RS17540at 3972.151 kb on + strand, within BPHYT_RS17540at 3972.151 kb on + strand, within BPHYT_RS17540at 3972.152 kb on - strand, within BPHYT_RS17540at 3972.152 kb on - strand, within BPHYT_RS17540

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
remove
3,969,536 - BPHYT_RS17525 0.71 -0.5
3,969,583 + BPHYT_RS17525 0.87 -0.4
3,969,584 - BPHYT_RS17525 0.87 -1.0
3,969,734 + BPHYT_RS17530 0.11 -1.1
3,969,817 + BPHYT_RS17530 0.25 -0.8
3,969,818 - BPHYT_RS17530 0.25 -1.4
3,969,818 - BPHYT_RS17530 0.25 -1.0
3,970,090 + BPHYT_RS17530 0.70 -2.3
3,970,090 + BPHYT_RS17530 0.70 -1.4
3,970,146 - BPHYT_RS17530 0.80 -1.4
3,970,266 - +0.0
3,970,266 - -0.2
3,970,299 + +2.0
3,970,372 + -1.7
3,970,372 + -0.5
3,970,372 + +0.5
3,970,372 + -0.1
3,970,372 + +0.6
3,970,372 + +0.3
3,970,372 + -0.5
3,970,373 - +0.1
3,970,373 - -0.2
3,970,373 - -1.1
3,970,373 - +0.2
3,970,373 - +0.4
3,970,373 - -0.7
3,970,374 + -0.4
3,970,375 - +0.3
3,970,375 - -0.4
3,970,381 - +0.1
3,970,393 + +0.0
3,970,393 + -0.3
3,970,393 + -0.6
3,970,394 - -0.3
3,970,394 - -0.3
3,970,439 - -0.1
3,970,647 + BPHYT_RS17535 0.28 -0.0
3,970,659 + BPHYT_RS17535 0.29 +0.2
3,970,660 - BPHYT_RS17535 0.30 -3.2
3,970,660 - BPHYT_RS17535 0.30 -0.2
3,970,801 + BPHYT_RS17535 0.47 +0.5
3,970,801 + BPHYT_RS17535 0.47 +1.3
3,971,136 + -0.5
3,971,166 + -0.5
3,971,166 + +0.1
3,971,166 + -0.1
3,971,167 - -0.3
3,971,167 - +0.1
3,971,193 + -0.3
3,971,194 - +0.5
3,971,194 - -0.4
3,971,194 - -0.9
3,971,194 - +0.9
3,971,198 - +0.3
3,971,198 - -0.0
3,971,198 - +0.2
3,971,211 + -0.2
3,971,225 - +0.0
3,971,233 + -0.2
3,971,234 - +0.9
3,971,234 - +0.2
3,971,302 + +0.2
3,971,392 + -0.5
3,971,392 + -1.7
3,971,392 + -0.9
3,971,393 - -0.2
3,971,393 - -0.5
3,971,393 - -0.5
3,971,393 - -0.7
3,971,507 - BPHYT_RS17540 0.13 +0.9
3,971,507 - BPHYT_RS17540 0.13 -0.8
3,971,575 + BPHYT_RS17540 0.17 -1.5
3,971,645 - BPHYT_RS17540 0.22 -0.6
3,971,944 + BPHYT_RS17540 0.40 -0.7
3,971,971 + BPHYT_RS17540 0.42 -1.5
3,971,971 + BPHYT_RS17540 0.42 -0.6
3,971,971 + BPHYT_RS17540 0.42 -0.7
3,971,972 - BPHYT_RS17540 0.42 +0.1
3,972,013 + BPHYT_RS17540 0.45 -0.1
3,972,014 - BPHYT_RS17540 0.45 -0.9
3,972,014 - BPHYT_RS17540 0.45 +1.1
3,972,130 + BPHYT_RS17540 0.52 -0.8
3,972,130 + BPHYT_RS17540 0.52 -0.5
3,972,130 + BPHYT_RS17540 0.52 -2.0
3,972,131 - BPHYT_RS17540 0.52 -1.0
3,972,151 + BPHYT_RS17540 0.53 +0.1
3,972,151 + BPHYT_RS17540 0.53 -1.5
3,972,151 + BPHYT_RS17540 0.53 -0.2
3,972,152 - BPHYT_RS17540 0.53 -0.2
3,972,152 - BPHYT_RS17540 0.53 +0.6

Or see this region's nucleotide sequence