Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17360

Experiment: Nickel (II) chloride 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nickel (II) chloride 1 mM
3,934,517	+				-0.7
3,934,652	-		BPHYT_RS17355	0.16	+0.3
3,934,700	+		BPHYT_RS17355	0.26	+0.1
3,934,825	+		BPHYT_RS17355	0.53	-0.8
3,934,825	+		BPHYT_RS17355	0.53	-0.3
3,934,825	+		BPHYT_RS17355	0.53	+0.2
3,934,825	+		BPHYT_RS17355	0.53	+1.1
3,934,826	-		BPHYT_RS17355	0.53	+0.4
3,934,826	-		BPHYT_RS17355	0.53	+0.0
3,934,826	-		BPHYT_RS17355	0.53	+0.2
3,934,826	-		BPHYT_RS17355	0.53	-1.2
3,934,826	-		BPHYT_RS17355	0.53	+0.0
3,934,892	+		BPHYT_RS17355	0.68	-0.6
3,934,893	-		BPHYT_RS17355	0.68	-0.1
3,934,942	+		BPHYT_RS17355	0.79	+0.1
3,934,942	+		BPHYT_RS17355	0.79	-0.5
3,934,943	-		BPHYT_RS17355	0.79	-1.1
3,934,943	-		BPHYT_RS17355	0.79	-0.3
3,935,151	+				-0.0
3,935,151	+				+0.2
3,935,151	+				-0.0
3,935,151	+				-0.7
3,935,152	-				-0.1
3,935,152	-				-0.6
3,935,152	-				-0.2
3,935,152	-				+0.3
3,935,152	-				-0.0
3,935,268	+				+0.9
3,935,269	-				-2.6
3,935,269	-				-0.4
3,935,291	-				+0.3
3,935,413	+		BPHYT_RS17360	0.17	+0.0
3,935,590	-		BPHYT_RS17360	0.31	+0.2
3,935,590	-		BPHYT_RS17360	0.31	-0.3
3,935,596	+		BPHYT_RS17360	0.31	+0.2
3,935,602	+		BPHYT_RS17360	0.31	+0.4
3,935,635	+		BPHYT_RS17360	0.34	+0.4
3,935,749	+		BPHYT_RS17360	0.43	+0.2
3,935,749	+		BPHYT_RS17360	0.43	-2.3
3,935,749	+		BPHYT_RS17360	0.43	-0.5
3,935,749	+		BPHYT_RS17360	0.43	-0.1
3,935,750	-		BPHYT_RS17360	0.43	+0.2
3,935,750	-		BPHYT_RS17360	0.43	+0.1
3,935,899	+		BPHYT_RS17360	0.54	+0.2
3,935,899	+		BPHYT_RS17360	0.54	-0.0
3,935,899	+		BPHYT_RS17360	0.54	-0.0
3,935,899	+		BPHYT_RS17360	0.54	+0.3
3,935,899	+		BPHYT_RS17360	0.54	-0.4
3,935,899	+		BPHYT_RS17360	0.54	+0.3
3,935,899	+		BPHYT_RS17360	0.54	-0.1
3,935,900	-		BPHYT_RS17360	0.54	-0.1
3,935,900	-		BPHYT_RS17360	0.54	-0.1
3,935,900	-		BPHYT_RS17360	0.54	+0.4
3,935,900	-		BPHYT_RS17360	0.54	-0.5
3,935,900	-		BPHYT_RS17360	0.54	+1.0
3,935,900	-		BPHYT_RS17360	0.54	+0.1
3,936,339	+		BPHYT_RS17360	0.88	-0.1
3,936,480	+				-0.1
3,936,481	-				-0.0
3,936,481	-				-0.2
3,936,481	-				+0.9
3,936,500	+				+0.3
3,936,501	-				-0.7
3,936,588	+				-0.1
3,936,588	+				+0.2
3,936,588	+				-0.7
3,936,588	+				-0.2
3,936,589	-				+0.0
3,936,637	-				+0.1
3,936,648	+				-1.3
3,936,655	-				-0.2
3,936,655	-				-1.0
3,936,655	-				-0.2