Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16740

Experiment: Nickel (II) chloride 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nickel (II) chloride 1 mM
3,789,605	+		BPHYT_RS16735	0.64	-0.7
3,789,605	+		BPHYT_RS16735	0.64	-2.7
3,789,633	-		BPHYT_RS16735	0.66	+0.6
3,789,633	-		BPHYT_RS16735	0.66	-0.7
3,790,056	-		BPHYT_RS16735	0.88	+0.1
3,790,208	+				+0.0
3,790,209	-				-0.4
3,790,209	-				+0.1
3,790,541	-				+1.5
3,790,542	+				+0.3
3,790,543	-				+0.9
3,790,544	+				-0.2
3,790,565	+				-1.2
3,790,566	-				-0.5
3,790,647	+				-0.5
3,790,647	+				-0.0
3,790,647	+				-0.5
3,790,648	-				-1.1
3,790,780	+		BPHYT_RS16740	0.24	-0.9
3,790,780	+		BPHYT_RS16740	0.24	-0.1
3,790,822	-		BPHYT_RS16740	0.28	-0.1
3,790,951	+		BPHYT_RS16740	0.44	-1.1
3,790,977	+		BPHYT_RS16740	0.47	-0.7
3,790,977	+		BPHYT_RS16740	0.47	-0.3
3,790,978	-		BPHYT_RS16740	0.47	-1.0
3,791,069	+		BPHYT_RS16740	0.58	-1.0
3,791,069	+		BPHYT_RS16740	0.58	-1.9
3,791,073	+		BPHYT_RS16740	0.58	-1.4
3,791,074	-		BPHYT_RS16740	0.58	-0.5
3,791,074	-		BPHYT_RS16740	0.58	-0.4
3,791,636	-		BPHYT_RS16745	0.18	+0.4
3,791,636	-		BPHYT_RS16745	0.18	+0.6
3,791,678	+		BPHYT_RS16745	0.24	-0.5
3,791,706	-		BPHYT_RS16745	0.27	-0.3
3,791,706	-				-0.4
3,791,706	-		BPHYT_RS16745	0.27	+0.4
3,791,706	-		BPHYT_RS16745	0.27	-0.3
3,791,707	+		BPHYT_RS16745	0.28	-0.3
3,791,790	-		BPHYT_RS16745	0.38	+0.6
3,792,158	+		BPHYT_RS16745	0.87	+1.5
3,792,158	+		BPHYT_RS16745	0.87	-0.2
3,792,160	+		BPHYT_RS16745	0.87	+0.1
3,792,160	+		BPHYT_RS16745	0.87	-1.7
3,792,161	-		BPHYT_RS16745	0.88	+0.4
3,792,182	+				+0.2
3,792,183	-				-0.4
3,792,183	-				-1.1
3,792,246	+				-0.1
3,792,247	-				-0.1
3,792,325	-				+1.6
3,792,383	-				+0.9