Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16385

Experiment: Nickel (II) chloride 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nickel (II) chloride 1 mM
3,716,602	-		BPHYT_RS16375	0.56	-2.3
3,716,653	+		BPHYT_RS16375	0.59	+1.1
3,716,653	+		BPHYT_RS16375	0.59	+0.0
3,716,653	+		BPHYT_RS16375	0.59	+1.0
3,716,654	-		BPHYT_RS16375	0.59	+0.1
3,716,654	-		BPHYT_RS16375	0.59	+1.2
3,716,654	-		BPHYT_RS16375	0.59	+0.3
3,716,683	+		BPHYT_RS16375	0.61	+0.0
3,716,683	+		BPHYT_RS16375	0.61	-0.5
3,716,843	-		BPHYT_RS16375	0.70	-0.2
3,716,911	+		BPHYT_RS16375	0.75	-0.8
3,716,912	-		BPHYT_RS16375	0.75	-0.2
3,716,912	-		BPHYT_RS16375	0.75	-0.1
3,716,912	-		BPHYT_RS16375	0.75	+0.1
3,717,064	+		BPHYT_RS16375	0.84	+0.9
3,717,065	-		BPHYT_RS16375	0.84	-0.7
3,717,065	-		BPHYT_RS16375	0.84	-2.1
3,717,079	+		BPHYT_RS16375	0.85	+0.3
3,717,131	-		BPHYT_RS16375	0.88	-0.4
3,717,151	+		BPHYT_RS16375	0.89	+0.3
3,717,151	+		BPHYT_RS16375	0.89	-0.8
3,717,152	-		BPHYT_RS16375	0.89	+0.2
3,717,226	-				+0.2
3,717,319	+				-0.1
3,717,319	+				-0.1
3,717,319	+				-0.5
3,717,319	+				-0.3
3,717,319	+				+0.4
3,717,319	+				-0.7
3,717,319	+				-0.3
3,717,320	-				+0.8
3,717,320	-				+0.6
3,717,320	-				+0.1
3,717,320	-				-0.5
3,717,320	-				-2.9
3,717,320	-				+0.5
3,717,320	-				+1.0
3,717,568	+				+0.3
3,717,721	+		BPHYT_RS16385	0.36	-0.4
3,717,722	-		BPHYT_RS16385	0.36	-1.3
3,717,745	-		BPHYT_RS16385	0.43	-0.0
3,717,837	-		BPHYT_RS16385	0.69	-2.0
3,717,942	+				+0.7
3,718,013	-				-1.0
3,718,161	-		BPHYT_RS16390	0.20	+0.1
3,718,528	+				-0.1
3,718,581	-				+0.9
3,718,581	-				+0.6
3,718,628	-				+0.4
3,718,781	+				+0.1
3,718,781	+				-0.2
3,718,782	-				-0.6
3,718,836	+		BPHYT_RS16395	0.12	+1.0
3,718,836	+		BPHYT_RS16395	0.12	+0.4
3,718,837	-		BPHYT_RS16395	0.12	+0.4