Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16180

Experiment: Nickel (II) chloride 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nickel (II) chloride 1 mM
3,673,147	-		BPHYT_RS16175	0.76	-2.8
3,673,147	-		BPHYT_RS16175	0.76	-2.3
3,673,410	-				-1.0
3,673,662	-				-0.4
3,673,706	-				-0.1
3,673,706	-				+1.5
3,673,706	-				-0.5
3,673,709	-				-0.8
3,673,709	-				-0.0
3,673,822	-				-2.6
3,673,911	+				+0.2
3,673,952	+		BPHYT_RS16180	0.13	+0.6
3,674,631	+				+0.5
3,674,631	+				+0.1
3,674,632	-				-0.5
3,674,632	-				-0.6
3,674,662	+				+1.9
3,674,662	+				+0.5
3,674,663	-				+0.3
3,674,663	-				-0.1
3,674,663	-				+0.3
3,674,663	-				-0.3
3,674,663	-				+0.8
3,674,663	-				-0.4
3,674,663	-				-0.4
3,674,663	-				+0.3
3,674,663	-				-0.3
3,674,663	-				-1.5
3,674,663	-				+0.1
3,674,663	-				+0.2
3,674,663	-				-0.1
3,674,664	+				-0.1
3,674,664	+				+0.3
3,674,664	+				+0.7
3,674,664	+				-0.9
3,674,665	-				-0.3
3,674,665	-				+0.1
3,674,665	-				+0.2
3,674,665	-				+0.6
3,674,666	+				+0.7
3,674,666	+				-0.1
3,674,666	+				+0.1
3,674,667	-				-0.1
3,674,667	-				-0.1
3,674,695	-				-0.3
3,674,745	+				+0.1
3,674,745	+				-0.1
3,674,745	+				+0.9
3,674,746	-				-0.8
3,674,746	-				-0.6
3,674,746	-				-0.3
3,674,746	-				-0.2
3,674,746	-				-0.7
3,674,749	+				+0.3
3,674,750	-				-0.6
3,674,988	+		BPHYT_RS16185	0.45	-0.4
3,675,082	-		BPHYT_RS16185	0.60	-0.0
3,675,082	-		BPHYT_RS16185	0.60	-0.1
3,675,082	-		BPHYT_RS16185	0.60	-0.5
3,675,082	-		BPHYT_RS16185	0.60	+0.9
3,675,244	+		BPHYT_RS16185	0.86	-0.2
3,675,244	+				+0.3
3,675,244	+		BPHYT_RS16185	0.86	+0.3
3,675,244	+		BPHYT_RS16185	0.86	+0.3
3,675,244	+		BPHYT_RS16185	0.86	-1.4
3,675,244	+		BPHYT_RS16185	0.86	+0.3
3,675,245	-		BPHYT_RS16185	0.86	-0.4
3,675,245	-		BPHYT_RS16185	0.86	-0.1
3,675,245	-		BPHYT_RS16185	0.86	+0.1
3,675,248	+		BPHYT_RS16185	0.86	+1.0
3,675,248	+		BPHYT_RS16185	0.86	+0.2
3,675,249	-		BPHYT_RS16185	0.86	-0.3
3,675,286	-				-0.2