Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15445

Experiment: Nickel (II) chloride 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nickel (II) chloride 1 mM
3,505,139	-				+0.4
3,505,142	-				-0.7
3,505,212	+				+0.9
3,505,320	+				+0.0
3,505,321	-				-0.4
3,505,881	+				-0.0
3,505,906	-				+0.5
3,505,966	+				+0.5
3,506,041	+				+0.0
3,506,041	+				+0.7
3,506,042	-				+0.4
3,506,042	-				+3.4
3,506,042	-				-0.2
3,506,042	-				+0.6
3,506,072	+		BPHYT_RS15445	0.12	-0.2
3,506,072	+		BPHYT_RS15445	0.12	-0.3
3,506,072	+		BPHYT_RS15445	0.12	+0.1
3,506,073	-		BPHYT_RS15445	0.12	+2.2
3,506,073	-		BPHYT_RS15445	0.12	-1.1
3,506,092	+		BPHYT_RS15445	0.14	-1.3
3,506,092	+		BPHYT_RS15445	0.14	-0.6
3,506,092	+		BPHYT_RS15445	0.14	-0.9
3,506,092	+		BPHYT_RS15445	0.14	+0.1
3,506,093	-		BPHYT_RS15445	0.14	+0.8
3,506,093	-		BPHYT_RS15445	0.14	+0.9
3,506,150	-		BPHYT_RS15445	0.21	+0.2
3,506,321	-		BPHYT_RS15445	0.40	+0.0
3,506,359	+		BPHYT_RS15445	0.44	+0.1
3,506,359	+		BPHYT_RS15445	0.44	-0.3
3,506,359	+		BPHYT_RS15445	0.44	+0.8
3,506,359	+		BPHYT_RS15445	0.44	-1.0
3,506,359	+		BPHYT_RS15445	0.44	+0.0
3,506,359	+		BPHYT_RS15445	0.44	-1.4
3,506,360	-		BPHYT_RS15445	0.44	+0.0
3,506,360	-		BPHYT_RS15445	0.44	-0.9
3,506,417	-		BPHYT_RS15445	0.50	+0.2
3,506,419	+		BPHYT_RS15445	0.51	+1.5
3,506,419	+		BPHYT_RS15445	0.51	+0.2
3,506,419	+		BPHYT_RS15445	0.51	-0.9
3,506,420	-		BPHYT_RS15445	0.51	+0.7
3,506,420	-		BPHYT_RS15445	0.51	-0.3
3,506,515	-		BPHYT_RS15445	0.61	-0.9
3,506,601	+		BPHYT_RS15445	0.71	-1.0
3,506,601	+		BPHYT_RS15445	0.71	+0.2
3,506,601	+		BPHYT_RS15445	0.71	-0.6
3,506,602	-		BPHYT_RS15445	0.71	+0.2
3,506,602	-		BPHYT_RS15445	0.71	-0.2
3,507,064	+				+0.1
3,507,149	-				-0.6
3,507,168	+				+0.3
3,507,172	+				+0.9
3,507,174	+				-0.5
3,507,281	+				-1.0
3,507,281	+				+0.6
3,507,344	+				-0.1
3,507,373	+				-0.0
3,507,373	+				-1.5
3,507,505	-				-0.1
3,507,531	-				-0.2
3,507,533	-				+0.5
3,507,582	+				+1.3
3,507,700	+				+0.3
3,507,700	+				+1.7
3,507,700	+				+0.1
3,507,738	+				+0.2
3,507,739	-				-0.1
3,507,739	-				-0.3
3,507,739	-				+2.3
3,507,739	-				-0.1
3,507,754	+				+0.7
3,507,754	+				-0.2
3,507,775	+				+0.4
3,507,775	+				-0.1
3,507,776	-				-1.5
3,507,776	-				-0.4
3,507,776	-				+0.9
3,507,776	-				+1.2