Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14705

Experiment: Nickel (II) chloride 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nickel (II) chloride 1 mM
3,349,051	-				+0.3
3,349,876	+				-0.0
3,349,876	+				+0.1
3,349,877	-				-0.6
3,349,910	-				+0.8
3,350,050	+				-1.5
3,350,050	+				+0.3
3,350,050	+				-0.2
3,350,254	+		BPHYT_RS14705	0.15	-3.0
3,350,255	-		BPHYT_RS14705	0.15	+2.7
3,350,255	-		BPHYT_RS14705	0.15	+0.9
3,350,255	-		BPHYT_RS14705	0.15	-0.0
3,350,255	-		BPHYT_RS14705	0.15	-1.2
3,350,255	-		BPHYT_RS14705	0.15	-0.6
3,350,435	-		BPHYT_RS14705	0.28	+0.5
3,350,461	-		BPHYT_RS14705	0.30	-0.8
3,350,605	+		BPHYT_RS14705	0.41	-0.4
3,350,794	+		BPHYT_RS14705	0.54	-1.5
3,351,124	+		BPHYT_RS14705	0.78	-0.1
3,351,377	+				-0.1
3,351,467	+				-0.0
3,351,467	+				-0.1
3,351,467	+				+0.1
3,351,467	+				-0.6
3,351,467	+				+1.2
3,351,468	-				+0.5
3,351,567	+				-0.1
3,351,567	+				+0.2
3,351,567	+				-0.0
3,351,568	-				+0.5
3,351,575	+				+0.7
3,351,575	+				+0.4
3,351,633	+				+0.6
3,351,714	+				-0.7
3,351,715	-				+0.6
3,351,972	+		BPHYT_RS14710	0.40	+0.7
3,351,973	-		BPHYT_RS14710	0.40	+1.7
3,351,973	-		BPHYT_RS14710	0.40	-0.1
3,352,041	+		BPHYT_RS14710	0.51	+0.2
3,352,042	-		BPHYT_RS14710	0.51	+0.3
3,352,042	-		BPHYT_RS14710	0.51	-0.3
3,352,414	+				-0.8