Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14470

Experiment: Nickel (II) chloride 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nickel (II) chloride 1 mM
3,297,531	-		BPHYT_RS14465	0.11	+0.1
3,297,802	-		BPHYT_RS14465	0.38	-0.6
3,297,802	-		BPHYT_RS14465	0.38	-0.9
3,297,903	-		BPHYT_RS14465	0.48	+0.7
3,297,903	-		BPHYT_RS14465	0.48	-0.4
3,297,930	-		BPHYT_RS14465	0.51	-0.8
3,297,969	-		BPHYT_RS14465	0.55	-1.1
3,298,054	-		BPHYT_RS14465	0.63	+0.5
3,298,141	-		BPHYT_RS14465	0.72	+0.2
3,298,246	+		BPHYT_RS14465	0.82	+0.3
3,298,247	-		BPHYT_RS14465	0.82	-0.5
3,298,324	-		BPHYT_RS14465	0.90	-1.2
3,298,602	-		BPHYT_RS14470	0.35	-0.6
3,298,618	-		BPHYT_RS14470	0.39	-0.0
3,298,618	-		BPHYT_RS14470	0.39	-0.6
3,298,631	+		BPHYT_RS14470	0.42	+0.5
3,298,631	+		BPHYT_RS14470	0.42	-1.2
3,298,632	-		BPHYT_RS14470	0.43	+0.6
3,298,684	+		BPHYT_RS14470	0.56	+0.7
3,298,712	+		BPHYT_RS14470	0.62	+0.1
3,298,727	+		BPHYT_RS14470	0.66	-0.8
3,298,917	-				+0.9
3,298,957	+		BPHYT_RS14475	0.15	+2.3
3,298,957	+		BPHYT_RS14475	0.15	+0.5
3,298,958	-		BPHYT_RS14475	0.15	-0.8
3,298,958	-		BPHYT_RS14475	0.15	-0.5
3,298,958	-		BPHYT_RS14475	0.15	-1.1
3,299,207	-		BPHYT_RS14475	0.53	+0.4
3,299,380	+		BPHYT_RS14475	0.79	+0.5
3,299,380	+		BPHYT_RS14475	0.79	-0.0
3,299,381	-		BPHYT_RS14475	0.79	-0.2
3,299,513	+				-0.4
3,299,514	-				+1.4
3,299,514	-				+0.3
3,299,551	+				-0.0
3,299,552	-				+0.5
3,299,552	-				-0.5
3,299,709	+		BPHYT_RS14480	0.19	+0.6
3,299,710	-		BPHYT_RS14480	0.19	-1.0
3,299,710	-		BPHYT_RS14480	0.19	-0.1
3,299,825	+		BPHYT_RS14480	0.31	+0.7
3,299,826	-		BPHYT_RS14480	0.31	-0.3
3,299,826	-		BPHYT_RS14480	0.31	+0.2
3,299,826	-		BPHYT_RS14480	0.31	+0.3
3,299,826	-		BPHYT_RS14480	0.31	-0.2