Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14235

Experiment: Nickel (II) chloride 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nickel (II) chloride 1 mM
3,251,058	+				-0.1
3,251,259	+				+1.1
3,251,259	+				-0.1
3,251,260	-				-0.0
3,251,343	+				+0.5
3,251,371	+				+0.1
3,251,372	-				-2.4
3,251,372	-				-0.8
3,251,374	-				-1.0
3,251,374	-				-0.3
3,251,374	-				-1.1
3,251,374	-				-1.5
3,251,374	-				-1.4
3,251,495	+				+1.6
3,251,495	+				+1.7
3,251,495	+				+1.1
3,251,603	+				+0.2
3,251,746	-				-2.2
3,251,971	+		BPHYT_RS14235	0.15	-3.3
3,251,971	+		BPHYT_RS14235	0.15	-1.4
3,251,972	-		BPHYT_RS14235	0.15	-0.5
3,252,248	-		BPHYT_RS14235	0.30	-0.2
3,252,248	-		BPHYT_RS14235	0.30	-0.7
3,252,248	-		BPHYT_RS14235	0.30	-0.4
3,252,248	-		BPHYT_RS14235	0.30	-1.4
3,252,248	-		BPHYT_RS14235	0.30	-0.2
3,252,536	+		BPHYT_RS14235	0.45	+0.9
3,252,607	+		BPHYT_RS14235	0.49	-2.1
3,252,608	-		BPHYT_RS14235	0.49	-1.1
3,252,608	-		BPHYT_RS14235	0.49	-0.4
3,252,775	+		BPHYT_RS14235	0.58	+0.5
3,252,873	+		BPHYT_RS14235	0.63	-1.3
3,252,873	+		BPHYT_RS14235	0.63	+0.9
3,252,873	+		BPHYT_RS14235	0.63	-0.6
3,252,873	+		BPHYT_RS14235	0.63	-1.3
3,252,874	-		BPHYT_RS14235	0.63	-1.8
3,252,874	-		BPHYT_RS14235	0.63	-0.1
3,252,874	-		BPHYT_RS14235	0.63	-0.8
3,253,039	+		BPHYT_RS14235	0.72	-1.0
3,253,040	-		BPHYT_RS14235	0.72	-1.0
3,253,040	-		BPHYT_RS14235	0.72	-0.8
3,253,129	+		BPHYT_RS14235	0.77	-0.4
3,253,130	-		BPHYT_RS14235	0.77	-1.0
3,253,565	-				-0.9
3,253,607	+				-0.1
3,253,665	-				-0.6
3,253,665	-				-0.3
3,253,725	-				-0.8
3,253,725	-				+0.1
3,253,768	-				-0.2
3,253,853	-				-0.8
3,253,915	-		BPHYT_RS14240	0.22	-0.3
3,253,915	-		BPHYT_RS14240	0.22	-0.3
3,254,058	+		BPHYT_RS14240	0.52	+0.5
3,254,058	+		BPHYT_RS14240	0.52	+0.4
3,254,059	-		BPHYT_RS14240	0.53	+0.1
3,254,236	-				-0.1
3,254,302	+				-0.0
3,254,303	-				+0.1
3,254,303	-				+0.7
3,254,313	+				-0.9
3,254,313	+				+0.6
3,254,313	+				+0.2
3,254,313	+				-1.2
3,254,313	+				+0.4
3,254,314	-				+0.0
3,254,314	-				+0.1
3,254,314	-				+0.1
3,254,314	-				-0.1
3,254,314	-				+0.1
3,254,378	+				-0.7