Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13750

Experiment: Nickel (II) chloride 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nickel (II) chloride 1 mM
3,132,044	+				+1.9
3,132,081	-		BPHYT_RS13745	0.13	-0.3
3,132,267	+		BPHYT_RS13745	0.48	+0.9
3,132,267	+		BPHYT_RS13745	0.48	+0.3
3,132,269	+		BPHYT_RS13745	0.48	+0.3
3,132,269	+		BPHYT_RS13745	0.48	-1.7
3,132,270	-		BPHYT_RS13745	0.49	-0.3
3,132,270	-		BPHYT_RS13745	0.49	-1.3
3,132,685	-				-0.4
3,132,685	-				-0.4
3,133,180	+		BPHYT_RS13750	0.41	-1.1
3,133,180	+		BPHYT_RS13750	0.41	-0.6
3,133,181	-		BPHYT_RS13750	0.41	-1.0
3,133,767	+		BPHYT_RS13750	0.82	-0.8
3,133,768	-		BPHYT_RS13750	0.82	-0.9
3,133,818	+		BPHYT_RS13750	0.86	-0.4
3,133,818	+		BPHYT_RS13750	0.86	-0.5
3,133,846	-		BPHYT_RS13750	0.88	-1.3
3,133,926	+				-2.7
3,133,927	-				-1.2
3,133,927	-				-0.8
3,133,928	+				-1.0
3,133,928	+				-1.0
3,133,929	-				-0.4
3,133,929	-				-0.4
3,133,929	-				-0.1
3,134,011	+				-0.9
3,134,012	-				-0.9
3,134,231	+		BPHYT_RS13755	0.20	+0.7
3,134,231	+		BPHYT_RS13755	0.20	-0.0
3,134,256	-		BPHYT_RS13755	0.23	-0.5
3,134,405	+		BPHYT_RS13755	0.42	-0.0
3,134,753	-		BPHYT_RS13755	0.85	-0.9
3,134,753	-		BPHYT_RS13755	0.85	-0.1
3,134,857	+				+1.9
3,134,871	+				+1.7
3,134,871	+				+0.1
3,134,873	+				+0.3
3,134,874	-				+0.3
3,134,874	-				+0.4
3,134,874	-				+0.3
3,134,932	+				+0.5
3,134,932	+				-0.0