Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13660

Experiment: Nickel (II) chloride 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nickel (II) chloride 1 mM
3,113,095	-		BPHYT_RS13655	0.58	+0.5
3,113,121	+		BPHYT_RS13655	0.59	-0.5
3,113,121	+		BPHYT_RS13655	0.59	-0.4
3,113,122	-		BPHYT_RS13655	0.59	-0.4
3,113,181	+		BPHYT_RS13655	0.62	+0.1
3,113,181	+		BPHYT_RS13655	0.62	+0.1
3,113,281	-		BPHYT_RS13655	0.67	+0.6
3,113,281	-		BPHYT_RS13655	0.67	-0.5
3,113,284	+		BPHYT_RS13655	0.67	-0.8
3,113,284	+		BPHYT_RS13655	0.67	-1.1
3,113,284	+		BPHYT_RS13655	0.67	-0.3
3,113,284	+		BPHYT_RS13655	0.67	+2.2
3,113,285	-		BPHYT_RS13655	0.67	-0.5
3,113,367	+		BPHYT_RS13655	0.70	+0.2
3,113,368	-		BPHYT_RS13655	0.70	-0.7
3,113,416	+		BPHYT_RS13655	0.73	-0.5
3,113,417	-		BPHYT_RS13655	0.73	+0.3
3,113,417	-		BPHYT_RS13655	0.73	+0.7
3,113,419	-		BPHYT_RS13655	0.73	-0.8
3,113,419	-		BPHYT_RS13655	0.73	-0.6
3,113,419	-		BPHYT_RS13655	0.73	-0.7
3,113,441	+		BPHYT_RS13655	0.74	-0.1
3,113,505	+		BPHYT_RS13655	0.77	-1.1
3,113,505	+		BPHYT_RS13655	0.77	-1.2
3,113,505	+		BPHYT_RS13655	0.77	-0.5
3,113,505	+		BPHYT_RS13655	0.77	+0.9
3,113,506	-		BPHYT_RS13655	0.77	-0.8
3,113,506	-		BPHYT_RS13655	0.77	-0.6
3,113,506	-		BPHYT_RS13655	0.77	-0.5
3,113,565	+		BPHYT_RS13655	0.79	-0.3
3,114,011	-				+0.8
3,114,011	-				+0.4
3,114,014	-				+1.3
3,114,025	+				+0.3
3,114,092	-				+1.4
3,114,092	-				+0.1
3,114,244	+		BPHYT_RS13660	0.44	+1.2
3,114,244	+		BPHYT_RS13660	0.44	-0.7
3,114,245	-		BPHYT_RS13660	0.44	+1.3
3,114,245	-		BPHYT_RS13660	0.44	+0.7
3,114,377	-		BPHYT_RS13660	0.81	+0.8
3,114,525	+				+1.0
3,114,525	+				+0.8
3,114,525	+				+1.3
3,114,526	-				-1.4
3,114,526	-				-0.2
3,114,528	+				-0.7
3,114,692	+		BPHYT_RS13665	0.18	+0.2
3,114,970	-		BPHYT_RS13665	0.48	-1.0
3,114,970	-		BPHYT_RS13665	0.48	+0.0
3,114,986	+		BPHYT_RS13665	0.50	+0.6
3,115,156	-		BPHYT_RS13665	0.69	+0.5
3,115,169	-		BPHYT_RS13665	0.70	+0.2
3,115,386	+				+0.4