Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12705

Experiment: Nickel (II) chloride 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nickel (II) chloride 1 mM
2,897,175	+		BPHYT_RS12700	0.72	-0.4
2,897,621	-		BPHYT_RS12700	0.88	-0.0
2,897,621	-		BPHYT_RS12700	0.88	-0.3
2,897,734	+				+0.1
2,897,734	+				+0.1
2,897,734	+				+0.5
2,897,735	-				+0.2
2,897,746	+				-0.0
2,897,747	-				+0.5
2,897,747	-				-0.4
2,897,770	+				-0.7
2,897,771	-				-0.2
2,898,072	+				+0.4
2,898,073	-				-0.6
2,898,073	-				-0.3
2,898,216	+		BPHYT_RS12705	0.18	+0.1
2,898,217	-		BPHYT_RS12705	0.19	+0.1
2,898,217	-		BPHYT_RS12705	0.19	+0.5
2,898,359	-		BPHYT_RS12705	0.37	+1.3
2,898,359	-		BPHYT_RS12705	0.37	-0.0
2,898,360	+		BPHYT_RS12705	0.37	+0.4
2,898,361	-		BPHYT_RS12705	0.37	+0.4
2,898,558	+		BPHYT_RS12705	0.62	+0.6
2,898,558	+		BPHYT_RS12705	0.62	+0.8
2,898,558	+		BPHYT_RS12705	0.62	+1.1
2,898,570	-		BPHYT_RS12705	0.63	+1.2
2,898,570	-		BPHYT_RS12705	0.63	-0.3