Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07275

Experiment: Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS07270 and BPHYT_RS07275 are separated by 67 nucleotidesBPHYT_RS07275 and BPHYT_RS07280 are separated by 115 nucleotides BPHYT_RS07270: BPHYT_RS07270 - aminocarboxymuconate-semialdehyde decarboxylase, at 1,649,241 to 1,650,263 _RS07270 BPHYT_RS07275: BPHYT_RS07275 - kynureninase, at 1,650,331 to 1,651,560 _RS07275 BPHYT_RS07280: BPHYT_RS07280 - amino acid permease, at 1,651,676 to 1,653,076 _RS07280 Position (kb) 1650 1651 1652Strain fitness (log2 ratio) -1 0 1at 1650.718 kb on + strand, within BPHYT_RS07275at 1650.991 kb on + strand, within BPHYT_RS07275at 1651.115 kb on - strand, within BPHYT_RS07275at 1652.046 kb on - strand, within BPHYT_RS07280at 1652.054 kb on + strand, within BPHYT_RS07280at 1652.054 kb on + strand, within BPHYT_RS07280at 1652.156 kb on + strand, within BPHYT_RS07280at 1652.214 kb on - strand, within BPHYT_RS07280at 1652.261 kb on + strand, within BPHYT_RS07280at 1652.302 kb on + strand, within BPHYT_RS07280at 1652.441 kb on + strand, within BPHYT_RS07280at 1652.442 kb on - strand, within BPHYT_RS07280

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
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1,650,718 + BPHYT_RS07275 0.31 -0.5
1,650,991 + BPHYT_RS07275 0.54 -0.8
1,651,115 - BPHYT_RS07275 0.64 -0.8
1,652,046 - BPHYT_RS07280 0.26 -0.5
1,652,054 + BPHYT_RS07280 0.27 -1.1
1,652,054 + BPHYT_RS07280 0.27 -0.8
1,652,156 + BPHYT_RS07280 0.34 +0.0
1,652,214 - BPHYT_RS07280 0.38 -0.2
1,652,261 + BPHYT_RS07280 0.42 -0.7
1,652,302 + BPHYT_RS07280 0.45 +0.4
1,652,441 + BPHYT_RS07280 0.55 +0.2
1,652,442 - BPHYT_RS07280 0.55 -0.1

Or see this region's nucleotide sequence