Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06970

Experiment: Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS06965 and BPHYT_RS06970 are separated by 266 nucleotidesBPHYT_RS06970 and BPHYT_RS06975 are separated by 215 nucleotides BPHYT_RS06965: BPHYT_RS06965 - cell envelope biogenesis protein TonB, at 1,575,179 to 1,575,913 _RS06965 BPHYT_RS06970: BPHYT_RS06970 - (2Fe-2S)-binding protein, at 1,576,180 to 1,576,416 _RS06970 BPHYT_RS06975: BPHYT_RS06975 - glutamate racemase, at 1,576,632 to 1,577,519 _RS06975 Position (kb) 1576 1577Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1576.182 kb on - strandat 1576.429 kb on - strandat 1576.429 kb on - strandat 1576.515 kb on + strandat 1576.515 kb on + strandat 1576.516 kb on - strandat 1577.075 kb on - strand, within BPHYT_RS06975at 1577.371 kb on + strand, within BPHYT_RS06975at 1577.372 kb on - strand, within BPHYT_RS06975at 1577.372 kb on - strand, within BPHYT_RS06975

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
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1,576,182 - -2.5
1,576,429 - -2.0
1,576,429 - -1.5
1,576,515 + -1.2
1,576,515 + -1.0
1,576,516 - -0.1
1,577,075 - BPHYT_RS06975 0.50 -1.0
1,577,371 + BPHYT_RS06975 0.83 -4.1
1,577,372 - BPHYT_RS06975 0.83 +1.4
1,577,372 - BPHYT_RS06975 0.83 -1.7

Or see this region's nucleotide sequence