Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS06915 and BPHYT_RS06920 are separated by 69 nucleotides BPHYT_RS06920 and BPHYT_RS06925 overlap by 4 nucleotides BPHYT_RS06925 and BPHYT_RS06930 are separated by 291 nucleotides BPHYT_RS06930 and BPHYT_RS06935 are separated by 193 nucleotides
BPHYT_RS06915: BPHYT_RS06915 - hypothetical protein, at 1,567,199 to 1,567,531
_RS06915
BPHYT_RS06920: BPHYT_RS06920 - iron permease FTR1, at 1,567,601 to 1,568,446
_RS06920
BPHYT_RS06925: BPHYT_RS06925 - membrane protein, at 1,568,443 to 1,569,849
_RS06925
BPHYT_RS06930: BPHYT_RS06930 - hypothetical protein, at 1,570,141 to 1,570,401
_RS06930
BPHYT_RS06935: BPHYT_RS06935 - hypothetical protein, at 1,570,595 to 1,571,077
_RS06935
Position (kb) 1568
1569
1570 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1567.529 kb on + strand at 1567.530 kb on - strand at 1567.614 kb on + strand at 1567.615 kb on - strand at 1567.716 kb on - strand, within BPHYT_RS06920 at 1567.968 kb on + strand, within BPHYT_RS06920 at 1567.968 kb on + strand, within BPHYT_RS06920 at 1568.015 kb on + strand, within BPHYT_RS06920 at 1568.105 kb on + strand, within BPHYT_RS06920 at 1568.105 kb on + strand, within BPHYT_RS06920 at 1568.105 kb on + strand, within BPHYT_RS06920 at 1568.106 kb on - strand, within BPHYT_RS06920 at 1568.107 kb on + strand, within BPHYT_RS06920 at 1568.108 kb on - strand, within BPHYT_RS06920 at 1568.384 kb on + strand at 1568.448 kb on + strand at 1568.548 kb on + strand at 1568.711 kb on + strand, within BPHYT_RS06925 at 1568.711 kb on + strand, within BPHYT_RS06925 at 1568.827 kb on + strand, within BPHYT_RS06925 at 1568.848 kb on + strand, within BPHYT_RS06925 at 1568.950 kb on + strand, within BPHYT_RS06925 at 1568.951 kb on - strand, within BPHYT_RS06925 at 1569.108 kb on + strand, within BPHYT_RS06925 at 1569.132 kb on + strand, within BPHYT_RS06925 at 1569.133 kb on - strand, within BPHYT_RS06925 at 1569.457 kb on + strand, within BPHYT_RS06925 at 1569.457 kb on + strand, within BPHYT_RS06925 at 1569.482 kb on - strand, within BPHYT_RS06925 at 1569.847 kb on + strand at 1569.848 kb on - strand at 1569.865 kb on + strand at 1569.879 kb on + strand at 1569.963 kb on + strand at 1569.964 kb on - strand at 1570.048 kb on - strand at 1570.048 kb on - strand at 1570.079 kb on - strand at 1570.116 kb on - strand at 1570.125 kb on + strand at 1570.126 kb on - strand at 1570.126 kb on - strand at 1570.126 kb on - strand at 1570.126 kb on - strand at 1570.142 kb on + strand at 1570.187 kb on + strand, within BPHYT_RS06930 at 1570.222 kb on - strand, within BPHYT_RS06930 at 1570.446 kb on - strand at 1570.510 kb on - strand at 1570.812 kb on + strand, within BPHYT_RS06935 at 1570.837 kb on - strand, within BPHYT_RS06935
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 1,567,529 + +0.7 1,567,530 - -2.7 1,567,614 + -2.3 1,567,615 - -1.8 1,567,716 - BPHYT_RS06920 0.14 -2.0 1,567,968 + BPHYT_RS06920 0.43 -3.1 1,567,968 + BPHYT_RS06920 0.43 -2.3 1,568,015 + BPHYT_RS06920 0.49 -2.4 1,568,105 + BPHYT_RS06920 0.60 -3.3 1,568,105 + BPHYT_RS06920 0.60 -2.0 1,568,105 + BPHYT_RS06920 0.60 -2.9 1,568,106 - BPHYT_RS06920 0.60 -1.2 1,568,107 + BPHYT_RS06920 0.60 -2.3 1,568,108 - BPHYT_RS06920 0.60 -4.1 1,568,384 + -1.2 1,568,448 + -2.1 1,568,548 + -3.4 1,568,711 + BPHYT_RS06925 0.19 -2.5 1,568,711 + BPHYT_RS06925 0.19 -1.8 1,568,827 + BPHYT_RS06925 0.27 -1.4 1,568,848 + BPHYT_RS06925 0.29 -2.3 1,568,950 + BPHYT_RS06925 0.36 -3.0 1,568,951 - BPHYT_RS06925 0.36 -3.0 1,569,108 + BPHYT_RS06925 0.47 -3.5 1,569,132 + BPHYT_RS06925 0.49 -3.8 1,569,133 - BPHYT_RS06925 0.49 -4.0 1,569,457 + BPHYT_RS06925 0.72 -2.8 1,569,457 + BPHYT_RS06925 0.72 -0.6 1,569,482 - BPHYT_RS06925 0.74 -0.7 1,569,847 + +0.6 1,569,848 - +0.6 1,569,865 + +0.8 1,569,879 + +0.1 1,569,963 + +0.7 1,569,964 - -1.2 1,570,048 - -1.1 1,570,048 - +0.5 1,570,079 - -0.5 1,570,116 - -0.5 1,570,125 + +0.1 1,570,126 - +0.5 1,570,126 - -0.1 1,570,126 - +0.0 1,570,126 - -0.5 1,570,142 + -0.7 1,570,187 + BPHYT_RS06930 0.18 -1.1 1,570,222 - BPHYT_RS06930 0.31 -0.7 1,570,446 - +0.8 1,570,510 - -1.2 1,570,812 + BPHYT_RS06935 0.45 +0.4 1,570,837 - BPHYT_RS06935 0.50 -0.2
Or see this region's nucleotide sequence