Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06190

Experiment: Nickel (II) chloride 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS06185 and BPHYT_RS06190 are separated by 345 nucleotidesBPHYT_RS06190 and BPHYT_RS06195 overlap by 1 nucleotides BPHYT_RS06185: BPHYT_RS06185 - glycosyl transferase family 1, at 1,411,489 to 1,412,565 _RS06185 BPHYT_RS06190: BPHYT_RS06190 - heptosyltransferase, at 1,412,911 to 1,414,038 _RS06190 BPHYT_RS06195: BPHYT_RS06195 - membrane protein, at 1,414,038 to 1,415,384 _RS06195 Position (kb) 1412 1413 1414 1415Strain fitness (log2 ratio) -2 -1 0 1at 1412.273 kb on - strand, within BPHYT_RS06185at 1412.588 kb on + strandat 1412.589 kb on - strandat 1412.699 kb on + strandat 1412.700 kb on - strandat 1412.870 kb on + strandat 1412.910 kb on + strandat 1412.910 kb on + strandat 1413.026 kb on + strand, within BPHYT_RS06190at 1413.133 kb on + strand, within BPHYT_RS06190at 1413.221 kb on - strand, within BPHYT_RS06190at 1413.689 kb on + strand, within BPHYT_RS06190at 1414.833 kb on + strand, within BPHYT_RS06195

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
remove
1,412,273 - BPHYT_RS06185 0.73 -0.6
1,412,588 + -0.1
1,412,589 - +0.4
1,412,699 + +0.1
1,412,700 - -0.8
1,412,870 + -0.4
1,412,910 + -1.1
1,412,910 + -0.1
1,413,026 + BPHYT_RS06190 0.10 -0.9
1,413,133 + BPHYT_RS06190 0.20 -0.8
1,413,221 - BPHYT_RS06190 0.27 -0.8
1,413,689 + BPHYT_RS06190 0.69 -0.5
1,414,833 + BPHYT_RS06195 0.59 -2.0

Or see this region's nucleotide sequence