Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05235

Experiment: Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS05230 and BPHYT_RS05235 overlap by 1 nucleotidesBPHYT_RS05235 and BPHYT_RS05240 are separated by 2 nucleotides BPHYT_RS05230: BPHYT_RS05230 - porphobilinogen deaminase, at 1,206,560 to 1,207,588 _RS05230 BPHYT_RS05235: BPHYT_RS05235 - bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase, at 1,207,588 to 1,209,606 _RS05235 BPHYT_RS05240: BPHYT_RS05240 - heme biosynthesis protein HemY, at 1,209,609 to 1,210,799 _RS05240 Position (kb) 1207 1208 1209 1210Strain fitness (log2 ratio) -1 0 1at 1208.481 kb on + strand, within BPHYT_RS05235at 1209.628 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
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1,208,481 + BPHYT_RS05235 0.44 -0.7
1,209,628 + -1.5

Or see this region's nucleotide sequence