Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03120 and BPHYT_RS03125 are separated by 3 nucleotides BPHYT_RS03125 and BPHYT_RS03130 are separated by 74 nucleotides BPHYT_RS03130 and BPHYT_RS03135 are separated by 74 nucleotides
BPHYT_RS03120: BPHYT_RS03120 - transcriptional regulator, at 698,299 to 699,189
_RS03120
BPHYT_RS03125: BPHYT_RS03125 - D-aminoacylase, at 699,193 to 700,674
_RS03125
BPHYT_RS03130: BPHYT_RS03130 - hypothetical protein, at 700,749 to 701,135
_RS03130
BPHYT_RS03135: BPHYT_RS03135 - NADPH-dependent 7-cyano-7-deazaguanine reductase, at 701,210 to 702,034
_RS03135
Position (kb) 699
700
701 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 698.230 kb on - strand at 698.290 kb on + strand at 698.306 kb on + strand at 698.307 kb on - strand at 698.498 kb on + strand, within BPHYT_RS03120 at 698.716 kb on + strand, within BPHYT_RS03120 at 698.717 kb on - strand, within BPHYT_RS03120 at 698.803 kb on + strand, within BPHYT_RS03120 at 698.874 kb on + strand, within BPHYT_RS03120 at 699.026 kb on - strand, within BPHYT_RS03120 at 699.141 kb on - strand at 699.141 kb on - strand at 699.244 kb on + strand at 699.581 kb on - strand, within BPHYT_RS03125 at 699.844 kb on + strand, within BPHYT_RS03125 at 699.845 kb on - strand, within BPHYT_RS03125 at 699.845 kb on - strand, within BPHYT_RS03125 at 700.049 kb on - strand, within BPHYT_RS03125 at 700.049 kb on - strand, within BPHYT_RS03125 at 700.049 kb on - strand, within BPHYT_RS03125 at 700.110 kb on + strand, within BPHYT_RS03125 at 700.111 kb on - strand, within BPHYT_RS03125 at 700.225 kb on + strand, within BPHYT_RS03125 at 700.360 kb on + strand, within BPHYT_RS03125 at 700.360 kb on + strand, within BPHYT_RS03125 at 700.360 kb on + strand, within BPHYT_RS03125 at 700.360 kb on + strand, within BPHYT_RS03125 at 700.433 kb on - strand, within BPHYT_RS03125 at 700.433 kb on - strand, within BPHYT_RS03125 at 700.461 kb on + strand, within BPHYT_RS03125 at 700.735 kb on + strand at 700.736 kb on - strand at 700.759 kb on - strand at 700.759 kb on - strand at 700.796 kb on + strand, within BPHYT_RS03130 at 701.031 kb on + strand, within BPHYT_RS03130 at 701.115 kb on + strand at 701.116 kb on - strand at 701.117 kb on + strand at 701.117 kb on + strand at 701.118 kb on - strand at 701.212 kb on - strand at 701.212 kb on - strand at 701.253 kb on + strand at 701.254 kb on - strand at 701.297 kb on - strand, within BPHYT_RS03135 at 701.298 kb on + strand, within BPHYT_RS03135 at 701.307 kb on + strand, within BPHYT_RS03135 at 701.307 kb on + strand, within BPHYT_RS03135 at 701.364 kb on - strand, within BPHYT_RS03135 at 701.580 kb on + strand, within BPHYT_RS03135 at 701.581 kb on - strand, within BPHYT_RS03135 at 701.581 kb on - strand, within BPHYT_RS03135 at 701.581 kb on - strand, within BPHYT_RS03135 at 701.581 kb on - strand, within BPHYT_RS03135
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 698,230 - -2.3 698,290 + -1.2 698,306 + +0.1 698,307 - +0.3 698,498 + BPHYT_RS03120 0.22 +0.1 698,716 + BPHYT_RS03120 0.47 -0.1 698,717 - BPHYT_RS03120 0.47 +0.9 698,803 + BPHYT_RS03120 0.57 -0.8 698,874 + BPHYT_RS03120 0.65 -0.3 699,026 - BPHYT_RS03120 0.82 -0.5 699,141 - +0.3 699,141 - -0.1 699,244 + +0.2 699,581 - BPHYT_RS03125 0.26 -0.2 699,844 + BPHYT_RS03125 0.44 -0.2 699,845 - BPHYT_RS03125 0.44 +0.7 699,845 - BPHYT_RS03125 0.44 +0.1 700,049 - BPHYT_RS03125 0.58 -0.9 700,049 - BPHYT_RS03125 0.58 -0.2 700,049 - BPHYT_RS03125 0.58 +0.6 700,110 + BPHYT_RS03125 0.62 -0.2 700,111 - BPHYT_RS03125 0.62 +0.2 700,225 + BPHYT_RS03125 0.70 -1.2 700,360 + BPHYT_RS03125 0.79 +0.0 700,360 + BPHYT_RS03125 0.79 -0.2 700,360 + BPHYT_RS03125 0.79 +0.2 700,360 + BPHYT_RS03125 0.79 +0.4 700,433 - BPHYT_RS03125 0.84 +0.1 700,433 - BPHYT_RS03125 0.84 +0.3 700,461 + BPHYT_RS03125 0.86 -0.4 700,735 + +0.2 700,736 - -0.6 700,759 - -0.3 700,759 - -0.4 700,796 + BPHYT_RS03130 0.12 -0.2 701,031 + BPHYT_RS03130 0.73 -0.1 701,115 + +0.1 701,116 - -0.0 701,117 + -0.1 701,117 + -0.7 701,118 - -0.6 701,212 - +0.0 701,212 - -0.0 701,253 + -3.1 701,254 - -1.5 701,297 - BPHYT_RS03135 0.11 -0.4 701,298 + BPHYT_RS03135 0.11 -1.5 701,307 + BPHYT_RS03135 0.12 -1.5 701,307 + BPHYT_RS03135 0.12 -2.3 701,364 - BPHYT_RS03135 0.19 -1.8 701,580 + BPHYT_RS03135 0.45 -1.6 701,581 - BPHYT_RS03135 0.45 -2.0 701,581 - BPHYT_RS03135 0.45 -0.1 701,581 - BPHYT_RS03135 0.45 -1.7 701,581 - BPHYT_RS03135 0.45 -0.5
Or see this region's nucleotide sequence