Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02725 and BPHYT_RS02730 are separated by 101 nucleotides BPHYT_RS02730 and BPHYT_RS02735 overlap by 8 nucleotides
BPHYT_RS02725: BPHYT_RS02725 - GntR family transcriptional regulator, at 610,643 to 611,377
_RS02725
BPHYT_RS02730: BPHYT_RS02730 - N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) <small>(from data)</small>, at 611,479 to 612,582
_RS02730
BPHYT_RS02735: BPHYT_RS02735 - Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) <small>(from data)</small>, at 612,575 to 613,582
_RS02735
Position (kb) 611
612
613 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 610.588 kb on + strand at 610.615 kb on - strand at 610.697 kb on + strand at 610.698 kb on - strand at 611.153 kb on + strand, within BPHYT_RS02725 at 611.154 kb on - strand, within BPHYT_RS02725 at 611.159 kb on + strand, within BPHYT_RS02725 at 611.159 kb on + strand, within BPHYT_RS02725 at 611.326 kb on + strand at 611.326 kb on + strand at 611.327 kb on - strand at 611.327 kb on - strand at 611.330 kb on + strand at 611.330 kb on + strand at 611.330 kb on + strand at 611.331 kb on - strand at 611.331 kb on - strand at 611.331 kb on - strand at 611.331 kb on - strand at 611.349 kb on - strand at 611.495 kb on + strand at 611.599 kb on + strand, within BPHYT_RS02730 at 611.600 kb on - strand, within BPHYT_RS02730 at 611.845 kb on + strand, within BPHYT_RS02730 at 611.846 kb on - strand, within BPHYT_RS02730 at 611.846 kb on - strand, within BPHYT_RS02730 at 611.917 kb on + strand, within BPHYT_RS02730 at 611.918 kb on - strand, within BPHYT_RS02730 at 612.040 kb on + strand, within BPHYT_RS02730 at 612.040 kb on + strand, within BPHYT_RS02730 at 612.040 kb on + strand, within BPHYT_RS02730 at 612.040 kb on + strand, within BPHYT_RS02730 at 612.241 kb on + strand, within BPHYT_RS02730 at 612.241 kb on + strand, within BPHYT_RS02730 at 612.242 kb on - strand, within BPHYT_RS02730 at 612.242 kb on - strand, within BPHYT_RS02730 at 612.242 kb on - strand, within BPHYT_RS02730 at 612.245 kb on + strand, within BPHYT_RS02730 at 612.246 kb on - strand, within BPHYT_RS02730 at 612.426 kb on - strand, within BPHYT_RS02730 at 612.426 kb on - strand, within BPHYT_RS02730 at 612.458 kb on - strand, within BPHYT_RS02730 at 612.458 kb on - strand, within BPHYT_RS02730 at 612.574 kb on + strand at 612.574 kb on + strand at 612.575 kb on - strand at 612.581 kb on - strand at 613.013 kb on + strand, within BPHYT_RS02735 at 613.013 kb on + strand, within BPHYT_RS02735 at 613.013 kb on + strand, within BPHYT_RS02735 at 613.014 kb on - strand, within BPHYT_RS02735 at 613.014 kb on - strand, within BPHYT_RS02735 at 613.014 kb on - strand, within BPHYT_RS02735 at 613.014 kb on - strand, within BPHYT_RS02735 at 613.014 kb on - strand, within BPHYT_RS02735 at 613.014 kb on - strand, within BPHYT_RS02735 at 613.016 kb on - strand at 613.016 kb on - strand, within BPHYT_RS02735 at 613.112 kb on - strand, within BPHYT_RS02735 at 613.432 kb on + strand, within BPHYT_RS02735 at 613.497 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 610,588 + -1.3 610,615 - -0.4 610,697 + +0.2 610,698 - +0.2 611,153 + BPHYT_RS02725 0.69 -0.1 611,154 - BPHYT_RS02725 0.70 -2.1 611,159 + BPHYT_RS02725 0.70 +0.1 611,159 + BPHYT_RS02725 0.70 +0.3 611,326 + -0.4 611,326 + +0.0 611,327 - -0.4 611,327 - -0.2 611,330 + +0.6 611,330 + +0.8 611,330 + -0.2 611,331 - -0.7 611,331 - -0.6 611,331 - -0.6 611,331 - +0.8 611,349 - +0.2 611,495 + -2.8 611,599 + BPHYT_RS02730 0.11 -1.2 611,600 - BPHYT_RS02730 0.11 -0.7 611,845 + BPHYT_RS02730 0.33 -2.4 611,846 - BPHYT_RS02730 0.33 -0.9 611,846 - BPHYT_RS02730 0.33 -1.3 611,917 + BPHYT_RS02730 0.40 -1.5 611,918 - BPHYT_RS02730 0.40 -1.3 612,040 + BPHYT_RS02730 0.51 +0.0 612,040 + BPHYT_RS02730 0.51 -2.7 612,040 + BPHYT_RS02730 0.51 -1.4 612,040 + BPHYT_RS02730 0.51 -0.7 612,241 + BPHYT_RS02730 0.69 -0.5 612,241 + BPHYT_RS02730 0.69 -1.0 612,242 - BPHYT_RS02730 0.69 -1.6 612,242 - BPHYT_RS02730 0.69 -1.3 612,242 - BPHYT_RS02730 0.69 -0.3 612,245 + BPHYT_RS02730 0.69 -1.2 612,246 - BPHYT_RS02730 0.69 -0.9 612,426 - BPHYT_RS02730 0.86 -1.0 612,426 - BPHYT_RS02730 0.86 -0.3 612,458 - BPHYT_RS02730 0.89 -0.9 612,458 - BPHYT_RS02730 0.89 -1.1 612,574 + +0.2 612,574 + -0.2 612,575 - +0.0 612,581 - +0.2 613,013 + BPHYT_RS02735 0.43 +0.1 613,013 + BPHYT_RS02735 0.43 -2.1 613,013 + BPHYT_RS02735 0.43 +0.1 613,014 - BPHYT_RS02735 0.44 -0.4 613,014 - BPHYT_RS02735 0.44 +0.0 613,014 - BPHYT_RS02735 0.44 -1.4 613,014 - BPHYT_RS02735 0.44 -1.0 613,014 - BPHYT_RS02735 0.44 -0.8 613,014 - BPHYT_RS02735 0.44 -0.7 613,016 - +0.9 613,016 - BPHYT_RS02735 0.44 +0.2 613,112 - BPHYT_RS02735 0.53 +0.1 613,432 + BPHYT_RS02735 0.85 +0.6 613,497 - -0.6
Or see this region's nucleotide sequence