Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02005 and BPHYT_RS02010 are separated by 44 nucleotides BPHYT_RS02010 and BPHYT_RS02015 are separated by 95 nucleotides BPHYT_RS02015 and BPHYT_RS02020 are separated by 303 nucleotides
BPHYT_RS02005: BPHYT_RS02005 - diguanylate phosphodiesterase, at 454,840 to 456,108
_RS02005
BPHYT_RS02010: BPHYT_RS02010 - copper homeostasis protein CutC, at 456,153 to 456,848
_RS02010
BPHYT_RS02015: BPHYT_RS02015 - phenylpyruvate ferredoxin oxidoreductase (EC 1.2.7.8) <small>(from data)</small>, at 456,944 to 460,531
_RS02015
BPHYT_RS02020: BPHYT_RS02020 - filamentous hemagglutinin family outer membrane protein, at 460,835 to 463,273
_RS02020
Position (kb) 456
457
458
459
460
461 Strain fitness (log2 ratio) -1
0
1
2
3 at 455.950 kb on + strand, within BPHYT_RS02005 at 456.153 kb on - strand at 456.355 kb on - strand, within BPHYT_RS02010 at 456.355 kb on - strand, within BPHYT_RS02010 at 456.370 kb on - strand, within BPHYT_RS02010 at 456.854 kb on + strand at 456.859 kb on - strand at 456.859 kb on - strand at 456.859 kb on - strand at 457.454 kb on + strand, within BPHYT_RS02015 at 457.466 kb on - strand, within BPHYT_RS02015 at 457.614 kb on + strand, within BPHYT_RS02015 at 457.614 kb on + strand, within BPHYT_RS02015 at 457.614 kb on + strand, within BPHYT_RS02015 at 457.615 kb on - strand, within BPHYT_RS02015 at 457.615 kb on - strand, within BPHYT_RS02015 at 457.629 kb on + strand, within BPHYT_RS02015 at 457.629 kb on + strand, within BPHYT_RS02015 at 457.630 kb on - strand at 458.113 kb on + strand, within BPHYT_RS02015 at 458.341 kb on - strand, within BPHYT_RS02015 at 458.490 kb on + strand, within BPHYT_RS02015 at 458.491 kb on - strand, within BPHYT_RS02015 at 458.935 kb on - strand, within BPHYT_RS02015 at 458.947 kb on - strand, within BPHYT_RS02015 at 459.006 kb on + strand, within BPHYT_RS02015 at 459.190 kb on + strand, within BPHYT_RS02015 at 459.191 kb on - strand, within BPHYT_RS02015 at 459.191 kb on - strand, within BPHYT_RS02015 at 459.191 kb on - strand, within BPHYT_RS02015 at 459.441 kb on + strand, within BPHYT_RS02015 at 459.442 kb on - strand, within BPHYT_RS02015 at 459.442 kb on - strand, within BPHYT_RS02015 at 459.447 kb on + strand, within BPHYT_RS02015 at 459.447 kb on + strand, within BPHYT_RS02015 at 459.447 kb on + strand, within BPHYT_RS02015 at 459.447 kb on + strand, within BPHYT_RS02015 at 459.448 kb on - strand, within BPHYT_RS02015 at 459.448 kb on - strand, within BPHYT_RS02015 at 459.448 kb on - strand, within BPHYT_RS02015 at 459.568 kb on - strand, within BPHYT_RS02015 at 459.568 kb on - strand, within BPHYT_RS02015 at 459.907 kb on - strand, within BPHYT_RS02015 at 459.948 kb on + strand, within BPHYT_RS02015 at 460.485 kb on + strand at 460.486 kb on - strand at 460.549 kb on - strand at 460.823 kb on + strand at 460.836 kb on + strand at 460.837 kb on - strand at 460.861 kb on - strand at 460.867 kb on - strand at 460.881 kb on + strand at 460.894 kb on - strand at 460.900 kb on + strand at 460.901 kb on - strand at 461.186 kb on + strand, within BPHYT_RS02020 at 461.187 kb on - strand, within BPHYT_RS02020 at 461.246 kb on - strand, within BPHYT_RS02020 at 461.310 kb on - strand, within BPHYT_RS02020
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 455,950 + BPHYT_RS02005 0.87 -1.0 456,153 - +0.1 456,355 - BPHYT_RS02010 0.29 +0.1 456,355 - BPHYT_RS02010 0.29 +1.0 456,370 - BPHYT_RS02010 0.31 -1.5 456,854 + +0.1 456,859 - +0.6 456,859 - +1.1 456,859 - -0.1 457,454 + BPHYT_RS02015 0.14 -0.3 457,466 - BPHYT_RS02015 0.15 -0.8 457,614 + BPHYT_RS02015 0.19 -0.4 457,614 + BPHYT_RS02015 0.19 -0.1 457,614 + BPHYT_RS02015 0.19 -0.2 457,615 - BPHYT_RS02015 0.19 -0.5 457,615 - BPHYT_RS02015 0.19 -0.6 457,629 + BPHYT_RS02015 0.19 -0.2 457,629 + BPHYT_RS02015 0.19 -0.2 457,630 - +2.8 458,113 + BPHYT_RS02015 0.33 -0.9 458,341 - BPHYT_RS02015 0.39 +0.7 458,490 + BPHYT_RS02015 0.43 -1.2 458,491 - BPHYT_RS02015 0.43 -0.6 458,935 - BPHYT_RS02015 0.55 -0.7 458,947 - BPHYT_RS02015 0.56 +1.0 459,006 + BPHYT_RS02015 0.57 +0.5 459,190 + BPHYT_RS02015 0.63 -1.4 459,191 - BPHYT_RS02015 0.63 -0.3 459,191 - BPHYT_RS02015 0.63 -0.5 459,191 - BPHYT_RS02015 0.63 -0.1 459,441 + BPHYT_RS02015 0.70 -0.1 459,442 - BPHYT_RS02015 0.70 -1.3 459,442 - BPHYT_RS02015 0.70 -0.7 459,447 + BPHYT_RS02015 0.70 -0.7 459,447 + BPHYT_RS02015 0.70 -0.2 459,447 + BPHYT_RS02015 0.70 +0.2 459,447 + BPHYT_RS02015 0.70 +0.5 459,448 - BPHYT_RS02015 0.70 -1.1 459,448 - BPHYT_RS02015 0.70 -1.6 459,448 - BPHYT_RS02015 0.70 +0.2 459,568 - BPHYT_RS02015 0.73 -0.2 459,568 - BPHYT_RS02015 0.73 +0.4 459,907 - BPHYT_RS02015 0.83 -0.3 459,948 + BPHYT_RS02015 0.84 -0.8 460,485 + +0.1 460,486 - -0.4 460,549 - +0.0 460,823 + -0.2 460,836 + -0.4 460,837 - +0.1 460,861 - -0.0 460,867 - +0.2 460,881 + +0.0 460,894 - -0.0 460,900 + +0.2 460,901 - +0.1 461,186 + BPHYT_RS02020 0.14 -0.2 461,187 - BPHYT_RS02020 0.14 +0.8 461,246 - BPHYT_RS02020 0.17 -0.7 461,310 - BPHYT_RS02020 0.19 +0.5
Or see this region's nucleotide sequence