Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01980 and BPHYT_RS01985 are separated by 88 nucleotides BPHYT_RS01985 and BPHYT_RS01990 are separated by 422 nucleotides
BPHYT_RS01980: BPHYT_RS01980 - diguanylate cyclase, at 446,805 to 448,337
_RS01980
BPHYT_RS01985: BPHYT_RS01985 - hypothetical protein, at 448,426 to 449,049
_RS01985
BPHYT_RS01990: BPHYT_RS01990 - methyl-accepting chemotaxis protein, at 449,472 to 451,037
_RS01990
Position (kb) 448
449
450 Strain fitness (log2 ratio) -1
0
1
2 at 447.467 kb on + strand, within BPHYT_RS01980 at 447.467 kb on + strand, within BPHYT_RS01980 at 447.493 kb on - strand, within BPHYT_RS01980 at 447.564 kb on + strand, within BPHYT_RS01980 at 447.565 kb on - strand, within BPHYT_RS01980 at 447.565 kb on - strand, within BPHYT_RS01980 at 447.578 kb on + strand, within BPHYT_RS01980 at 447.579 kb on - strand, within BPHYT_RS01980 at 447.589 kb on - strand, within BPHYT_RS01980 at 447.589 kb on - strand at 447.630 kb on + strand, within BPHYT_RS01980 at 447.631 kb on - strand, within BPHYT_RS01980 at 447.631 kb on - strand, within BPHYT_RS01980 at 448.219 kb on + strand at 448.220 kb on - strand at 448.221 kb on + strand at 448.222 kb on - strand at 448.222 kb on - strand at 448.880 kb on - strand, within BPHYT_RS01985 at 448.918 kb on + strand, within BPHYT_RS01985 at 449.048 kb on - strand at 449.048 kb on - strand at 449.153 kb on + strand at 449.154 kb on - strand at 449.154 kb on - strand at 449.206 kb on - strand at 449.224 kb on + strand at 449.224 kb on + strand at 449.226 kb on + strand at 449.226 kb on + strand at 449.227 kb on - strand at 449.227 kb on - strand at 449.227 kb on - strand at 449.309 kb on + strand at 449.349 kb on + strand at 449.349 kb on + strand at 449.350 kb on - strand at 449.465 kb on + strand at 449.570 kb on + strand at 449.594 kb on + strand at 449.594 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 447,467 + BPHYT_RS01980 0.43 +0.5 447,467 + BPHYT_RS01980 0.43 -0.6 447,493 - BPHYT_RS01980 0.45 +0.4 447,564 + BPHYT_RS01980 0.50 +1.1 447,565 - BPHYT_RS01980 0.50 -0.9 447,565 - BPHYT_RS01980 0.50 -0.5 447,578 + BPHYT_RS01980 0.50 -0.2 447,579 - BPHYT_RS01980 0.50 +0.1 447,589 - BPHYT_RS01980 0.51 -0.1 447,589 - +2.1 447,630 + BPHYT_RS01980 0.54 +0.1 447,631 - BPHYT_RS01980 0.54 -0.1 447,631 - BPHYT_RS01980 0.54 +0.1 448,219 + -0.3 448,220 - -0.5 448,221 + -0.6 448,222 - -0.4 448,222 - -0.4 448,880 - BPHYT_RS01985 0.73 +1.3 448,918 + BPHYT_RS01985 0.79 +0.9 449,048 - +0.2 449,048 - -0.2 449,153 + +0.9 449,154 - +0.5 449,154 - +0.4 449,206 - -0.4 449,224 + -0.1 449,224 + +0.1 449,226 + -1.5 449,226 + -0.2 449,227 - +0.5 449,227 - +0.2 449,227 - +0.9 449,309 + +0.3 449,349 + -0.1 449,349 + +0.3 449,350 - -0.1 449,465 + +0.5 449,570 + +0.6 449,594 + -0.1 449,594 + +0.0
Or see this region's nucleotide sequence