Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01900 and BPHYT_RS01905 are separated by 192 nucleotides BPHYT_RS01905 and BPHYT_RS01910 are separated by 398 nucleotides
BPHYT_RS01900: BPHYT_RS01900 - amino acid ABC transporter permease, at 433,133 to 434,344
_RS01900
BPHYT_RS01905: BPHYT_RS01905 - pyridoxamine 5'-phosphate oxidase, at 434,537 to 435,199
_RS01905
BPHYT_RS01910: BPHYT_RS01910 - H-NS histone, at 435,598 to 435,900
_RS01910
Position (kb) 434
435
436 Strain fitness (log2 ratio) -2
-1
0
1 at 433.552 kb on - strand, within BPHYT_RS01900 at 433.597 kb on + strand, within BPHYT_RS01900 at 433.598 kb on - strand, within BPHYT_RS01900 at 433.599 kb on + strand, within BPHYT_RS01900 at 433.600 kb on - strand, within BPHYT_RS01900 at 433.618 kb on - strand, within BPHYT_RS01900 at 433.618 kb on - strand, within BPHYT_RS01900 at 434.008 kb on - strand, within BPHYT_RS01900 at 434.223 kb on + strand at 434.223 kb on + strand at 434.223 kb on + strand at 434.224 kb on - strand at 434.224 kb on - strand at 434.224 kb on - strand at 434.224 kb on - strand at 434.422 kb on + strand at 434.422 kb on + strand at 434.423 kb on - strand at 434.447 kb on - strand at 434.447 kb on - strand at 434.480 kb on + strand at 434.516 kb on + strand at 434.516 kb on + strand at 434.516 kb on + strand at 434.520 kb on + strand at 434.520 kb on + strand at 434.704 kb on + strand, within BPHYT_RS01905 at 434.705 kb on - strand, within BPHYT_RS01905 at 434.705 kb on - strand, within BPHYT_RS01905 at 434.844 kb on - strand, within BPHYT_RS01905 at 434.873 kb on + strand, within BPHYT_RS01905 at 434.873 kb on + strand, within BPHYT_RS01905 at 434.874 kb on - strand, within BPHYT_RS01905 at 434.874 kb on - strand, within BPHYT_RS01905 at 434.880 kb on + strand, within BPHYT_RS01905 at 434.881 kb on - strand, within BPHYT_RS01905 at 434.929 kb on + strand, within BPHYT_RS01905 at 434.929 kb on + strand, within BPHYT_RS01905 at 435.238 kb on + strand at 435.263 kb on + strand at 435.263 kb on + strand at 435.263 kb on + strand at 435.343 kb on + strand at 435.898 kb on + strand at 435.899 kb on - strand at 435.956 kb on + strand at 435.956 kb on + strand at 435.985 kb on + strand at 436.100 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 433,552 - BPHYT_RS01900 0.35 -0.0 433,597 + BPHYT_RS01900 0.38 +0.4 433,598 - BPHYT_RS01900 0.38 +0.3 433,599 + BPHYT_RS01900 0.38 +0.2 433,600 - BPHYT_RS01900 0.39 +0.6 433,618 - BPHYT_RS01900 0.40 -1.5 433,618 - BPHYT_RS01900 0.40 -0.4 434,008 - BPHYT_RS01900 0.72 +0.1 434,223 + +0.5 434,223 + -1.3 434,223 + +1.4 434,224 - -0.5 434,224 - +0.5 434,224 - +0.2 434,224 - -0.2 434,422 + -1.1 434,422 + +0.1 434,423 - -1.1 434,447 - -0.2 434,447 - +0.7 434,480 + -0.1 434,516 + +0.4 434,516 + +0.8 434,516 + +0.3 434,520 + +0.4 434,520 + +0.2 434,704 + BPHYT_RS01905 0.25 -0.7 434,705 - BPHYT_RS01905 0.25 -0.6 434,705 - BPHYT_RS01905 0.25 -0.2 434,844 - BPHYT_RS01905 0.46 -0.8 434,873 + BPHYT_RS01905 0.51 -0.0 434,873 + BPHYT_RS01905 0.51 +0.6 434,874 - BPHYT_RS01905 0.51 -1.0 434,874 - BPHYT_RS01905 0.51 -0.9 434,880 + BPHYT_RS01905 0.52 +0.4 434,881 - BPHYT_RS01905 0.52 -0.3 434,929 + BPHYT_RS01905 0.59 +0.3 434,929 + BPHYT_RS01905 0.59 +0.3 435,238 + -0.6 435,263 + +0.9 435,263 + +0.3 435,263 + +0.4 435,343 + +0.3 435,898 + -0.7 435,899 - -1.5 435,956 + -0.9 435,956 + -2.1 435,985 + -0.3 436,100 - -0.1
Or see this region's nucleotide sequence