Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01510 and BPHYT_RS01515 are separated by 213 nucleotides BPHYT_RS01515 and BPHYT_RS01520 overlap by 4 nucleotides BPHYT_RS01520 and BPHYT_RS01525 are separated by 107 nucleotides
BPHYT_RS01510: BPHYT_RS01510 - 6-carboxy-5,6,7,8-tetrahydropterin synthase, at 343,886 to 344,332
_RS01510
BPHYT_RS01515: BPHYT_RS01515 - 2-dehydro-3-deoxyglucarate aldolase, at 344,546 to 345,328
_RS01515
BPHYT_RS01520: BPHYT_RS01520 - hypothetical protein, at 345,325 to 346,029
_RS01520
BPHYT_RS01525: BPHYT_RS01525 - cell wall shape-determining protein, at 346,137 to 347,285
_RS01525
Position (kb) 345
346
347 Strain fitness (log2 ratio) -2
-1
0
1
2 at 344.330 kb on + strand at 344.330 kb on + strand at 344.331 kb on - strand at 344.339 kb on + strand at 344.371 kb on + strand at 344.382 kb on + strand at 344.767 kb on - strand, within BPHYT_RS01515 at 344.767 kb on - strand, within BPHYT_RS01515 at 344.767 kb on - strand, within BPHYT_RS01515 at 344.808 kb on + strand, within BPHYT_RS01515 at 344.808 kb on + strand, within BPHYT_RS01515 at 344.808 kb on + strand, within BPHYT_RS01515 at 344.969 kb on + strand, within BPHYT_RS01515 at 344.970 kb on - strand, within BPHYT_RS01515 at 345.200 kb on - strand, within BPHYT_RS01515 at 345.318 kb on + strand at 345.318 kb on + strand at 345.319 kb on - strand at 345.366 kb on + strand at 345.397 kb on + strand, within BPHYT_RS01520 at 345.398 kb on - strand, within BPHYT_RS01520 at 345.460 kb on + strand, within BPHYT_RS01520 at 345.541 kb on + strand, within BPHYT_RS01520 at 345.541 kb on + strand, within BPHYT_RS01520 at 345.542 kb on - strand, within BPHYT_RS01520 at 345.542 kb on - strand, within BPHYT_RS01520 at 345.627 kb on + strand, within BPHYT_RS01520 at 345.627 kb on + strand, within BPHYT_RS01520 at 345.627 kb on + strand, within BPHYT_RS01520 at 345.627 kb on + strand, within BPHYT_RS01520 at 345.628 kb on - strand, within BPHYT_RS01520 at 345.628 kb on - strand, within BPHYT_RS01520 at 345.628 kb on - strand at 345.662 kb on - strand, within BPHYT_RS01520 at 345.813 kb on + strand, within BPHYT_RS01520 at 345.860 kb on - strand, within BPHYT_RS01520 at 345.877 kb on + strand, within BPHYT_RS01520 at 345.877 kb on + strand, within BPHYT_RS01520 at 345.877 kb on + strand at 345.878 kb on - strand, within BPHYT_RS01520 at 345.928 kb on + strand, within BPHYT_RS01520 at 345.928 kb on + strand, within BPHYT_RS01520 at 345.928 kb on + strand, within BPHYT_RS01520 at 345.932 kb on - strand, within BPHYT_RS01520 at 345.976 kb on + strand at 345.976 kb on + strand at 345.977 kb on - strand at 345.977 kb on - strand at 346.099 kb on + strand at 346.139 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 344,330 + -0.5 344,330 + -0.4 344,331 - -0.5 344,339 + +0.2 344,371 + +0.1 344,382 + +0.1 344,767 - BPHYT_RS01515 0.28 -0.6 344,767 - BPHYT_RS01515 0.28 +0.7 344,767 - BPHYT_RS01515 0.28 -1.3 344,808 + BPHYT_RS01515 0.33 -0.2 344,808 + BPHYT_RS01515 0.33 -0.3 344,808 + BPHYT_RS01515 0.33 -0.9 344,969 + BPHYT_RS01515 0.54 -0.2 344,970 - BPHYT_RS01515 0.54 -0.1 345,200 - BPHYT_RS01515 0.84 +0.0 345,318 + +0.2 345,318 + -0.1 345,319 - -0.1 345,366 + +0.2 345,397 + BPHYT_RS01520 0.10 +0.2 345,398 - BPHYT_RS01520 0.10 -0.2 345,460 + BPHYT_RS01520 0.19 +0.4 345,541 + BPHYT_RS01520 0.31 -0.2 345,541 + BPHYT_RS01520 0.31 +0.5 345,542 - BPHYT_RS01520 0.31 +0.2 345,542 - BPHYT_RS01520 0.31 +1.8 345,627 + BPHYT_RS01520 0.43 +0.1 345,627 + BPHYT_RS01520 0.43 -0.4 345,627 + BPHYT_RS01520 0.43 -0.1 345,627 + BPHYT_RS01520 0.43 -2.6 345,628 - BPHYT_RS01520 0.43 -0.4 345,628 - BPHYT_RS01520 0.43 -0.3 345,628 - -0.6 345,662 - BPHYT_RS01520 0.48 +0.7 345,813 + BPHYT_RS01520 0.69 -0.3 345,860 - BPHYT_RS01520 0.76 +0.4 345,877 + BPHYT_RS01520 0.78 -0.2 345,877 + BPHYT_RS01520 0.78 -0.3 345,877 + -0.6 345,878 - BPHYT_RS01520 0.78 -0.3 345,928 + BPHYT_RS01520 0.86 +0.0 345,928 + BPHYT_RS01520 0.86 -0.2 345,928 + BPHYT_RS01520 0.86 +1.7 345,932 - BPHYT_RS01520 0.86 +0.2 345,976 + +0.4 345,976 + +0.4 345,977 - -0.0 345,977 - +0.2 346,099 + +0.3 346,139 - -0.1
Or see this region's nucleotide sequence