Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS01500

Experiment: Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS01490 and BPHYT_RS01495 are separated by 107 nucleotidesBPHYT_RS01495 and BPHYT_RS01500 are separated by 389 nucleotidesBPHYT_RS01500 and BPHYT_RS01505 are separated by 62 nucleotidesBPHYT_RS01505 and BPHYT_RS01510 are separated by 6 nucleotides BPHYT_RS01490: BPHYT_RS01490 - XRE family transcriptional regulator, at 341,188 to 341,877 _RS01490 BPHYT_RS01495: BPHYT_RS01495 - tRNA-Phe, at 341,985 to 342,060 _RS01495 BPHYT_RS01500: BPHYT_RS01500 - 7-cyano-7-deazaguanine synthase, at 342,450 to 343,184 _RS01500 BPHYT_RS01505: BPHYT_RS01505 - 7-cyano-7-deazaguanine reductase, at 343,247 to 343,879 _RS01505 BPHYT_RS01510: BPHYT_RS01510 - 6-carboxy-5,6,7,8-tetrahydropterin synthase, at 343,886 to 344,332 _RS01510 Position (kb) 342 343 344Strain fitness (log2 ratio) -3 -2 -1 0 1at 342.116 kb on - strandat 342.234 kb on - strandat 342.272 kb on + strandat 342.273 kb on - strandat 342.273 kb on - strandat 342.298 kb on + strandat 342.304 kb on + strandat 342.304 kb on + strandat 342.305 kb on - strandat 342.306 kb on + strandat 342.306 kb on + strandat 342.306 kb on + strandat 342.307 kb on - strandat 342.307 kb on - strandat 342.307 kb on - strandat 342.307 kb on - strandat 342.307 kb on - strandat 342.343 kb on + strandat 342.343 kb on + strandat 342.344 kb on - strandat 342.345 kb on + strandat 342.346 kb on - strandat 342.346 kb on - strandat 342.346 kb on - strandat 342.473 kb on + strandat 342.540 kb on + strand, within BPHYT_RS01500at 342.559 kb on + strand, within BPHYT_RS01500at 342.559 kb on + strand, within BPHYT_RS01500at 342.559 kb on + strand, within BPHYT_RS01500at 342.559 kb on + strand, within BPHYT_RS01500at 342.560 kb on - strand, within BPHYT_RS01500at 342.560 kb on - strand, within BPHYT_RS01500at 342.570 kb on + strand, within BPHYT_RS01500at 342.671 kb on + strand, within BPHYT_RS01500at 342.671 kb on + strand, within BPHYT_RS01500at 342.671 kb on + strand, within BPHYT_RS01500at 342.671 kb on + strand, within BPHYT_RS01500at 342.671 kb on + strand, within BPHYT_RS01500at 342.671 kb on + strand, within BPHYT_RS01500at 342.672 kb on - strand, within BPHYT_RS01500at 342.672 kb on - strand, within BPHYT_RS01500at 342.672 kb on - strand, within BPHYT_RS01500at 342.935 kb on + strand, within BPHYT_RS01500at 342.935 kb on + strand, within BPHYT_RS01500at 342.936 kb on - strand, within BPHYT_RS01500at 343.049 kb on + strand, within BPHYT_RS01500at 343.049 kb on + strand, within BPHYT_RS01500at 343.049 kb on + strand, within BPHYT_RS01500at 343.049 kb on + strand, within BPHYT_RS01500at 343.049 kb on + strand, within BPHYT_RS01500at 343.049 kb on + strand, within BPHYT_RS01500at 343.049 kb on + strand, within BPHYT_RS01500at 343.050 kb on - strand, within BPHYT_RS01500at 343.050 kb on - strand, within BPHYT_RS01500at 343.050 kb on - strand, within BPHYT_RS01500at 343.050 kb on - strand, within BPHYT_RS01500at 343.050 kb on - strand, within BPHYT_RS01500at 343.050 kb on - strand, within BPHYT_RS01500at 343.050 kb on - strand, within BPHYT_RS01500at 343.056 kb on + strand, within BPHYT_RS01500at 343.056 kb on + strand, within BPHYT_RS01500at 343.057 kb on - strand, within BPHYT_RS01500at 343.057 kb on - strand, within BPHYT_RS01500at 343.057 kb on - strand, within BPHYT_RS01500at 343.057 kb on - strand, within BPHYT_RS01500at 343.057 kb on - strand, within BPHYT_RS01500at 343.057 kb on - strand, within BPHYT_RS01500at 343.146 kb on + strandat 343.146 kb on + strandat 343.146 kb on + strandat 343.146 kb on + strandat 343.146 kb on + strandat 343.146 kb on + strandat 343.147 kb on - strandat 343.253 kb on + strandat 343.275 kb on - strandat 343.436 kb on + strand, within BPHYT_RS01505at 343.437 kb on - strand, within BPHYT_RS01505at 343.731 kb on - strand, within BPHYT_RS01505at 343.862 kb on + strandat 343.862 kb on + strandat 343.862 kb on + strandat 343.862 kb on + strandat 343.862 kb on + strandat 343.863 kb on - strandat 343.957 kb on + strand, within BPHYT_RS01510at 343.958 kb on - strand, within BPHYT_RS01510at 343.976 kb on + strand, within BPHYT_RS01510at 343.976 kb on + strand, within BPHYT_RS01510at 343.976 kb on + strand, within BPHYT_RS01510at 343.976 kb on + strand, within BPHYT_RS01510at 343.977 kb on - strand, within BPHYT_RS01510at 343.977 kb on - strand, within BPHYT_RS01510at 343.977 kb on - strand, within BPHYT_RS01510at 343.977 kb on - strand, within BPHYT_RS01510at 343.977 kb on - strand, within BPHYT_RS01510at 344.117 kb on + strand, within BPHYT_RS01510at 344.117 kb on + strand, within BPHYT_RS01510at 344.118 kb on - strand, within BPHYT_RS01510at 344.118 kb on - strand, within BPHYT_RS01510at 344.128 kb on + strand, within BPHYT_RS01510at 344.129 kb on - strand, within BPHYT_RS01510at 344.129 kb on - strand, within BPHYT_RS01510

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
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342,116 - -0.2
342,234 - -1.2
342,272 + -1.2
342,273 - -1.3
342,273 - -2.3
342,298 + +0.6
342,304 + +0.4
342,304 + +0.1
342,305 - -1.1
342,306 + -0.3
342,306 + -0.2
342,306 + -0.5
342,307 - -0.6
342,307 - +0.4
342,307 - -2.7
342,307 - -2.1
342,307 - -0.3
342,343 + +0.5
342,343 + -1.0
342,344 - +0.1
342,345 + -0.3
342,346 - -1.5
342,346 - +0.1
342,346 - -1.9
342,473 + -1.2
342,540 + BPHYT_RS01500 0.12 +1.0
342,559 + BPHYT_RS01500 0.15 -1.4
342,559 + BPHYT_RS01500 0.15 -1.5
342,559 + BPHYT_RS01500 0.15 -1.7
342,559 + BPHYT_RS01500 0.15 -1.4
342,560 - BPHYT_RS01500 0.15 -0.5
342,560 - BPHYT_RS01500 0.15 -2.3
342,570 + BPHYT_RS01500 0.16 -1.5
342,671 + BPHYT_RS01500 0.30 -1.6
342,671 + BPHYT_RS01500 0.30 -1.2
342,671 + BPHYT_RS01500 0.30 -1.2
342,671 + BPHYT_RS01500 0.30 -1.8
342,671 + BPHYT_RS01500 0.30 -1.7
342,671 + BPHYT_RS01500 0.30 -2.4
342,672 - BPHYT_RS01500 0.30 -0.6
342,672 - BPHYT_RS01500 0.30 -0.8
342,672 - BPHYT_RS01500 0.30 -0.5
342,935 + BPHYT_RS01500 0.66 -1.2
342,935 + BPHYT_RS01500 0.66 -2.8
342,936 - BPHYT_RS01500 0.66 -1.2
343,049 + BPHYT_RS01500 0.81 -1.6
343,049 + BPHYT_RS01500 0.81 -1.4
343,049 + BPHYT_RS01500 0.81 -1.8
343,049 + BPHYT_RS01500 0.81 -1.5
343,049 + BPHYT_RS01500 0.81 -2.3
343,049 + BPHYT_RS01500 0.81 -2.1
343,049 + BPHYT_RS01500 0.81 -1.2
343,050 - BPHYT_RS01500 0.82 +0.7
343,050 - BPHYT_RS01500 0.82 -1.6
343,050 - BPHYT_RS01500 0.82 -1.2
343,050 - BPHYT_RS01500 0.82 -1.8
343,050 - BPHYT_RS01500 0.82 -1.2
343,050 - BPHYT_RS01500 0.82 -2.5
343,050 - BPHYT_RS01500 0.82 -1.7
343,056 + BPHYT_RS01500 0.82 -1.5
343,056 + BPHYT_RS01500 0.82 +0.2
343,057 - BPHYT_RS01500 0.83 -2.0
343,057 - BPHYT_RS01500 0.83 -0.5
343,057 - BPHYT_RS01500 0.83 -1.5
343,057 - BPHYT_RS01500 0.83 -1.6
343,057 - BPHYT_RS01500 0.83 -1.7
343,057 - BPHYT_RS01500 0.83 -1.2
343,146 + -1.1
343,146 + -1.4
343,146 + -1.0
343,146 + -0.6
343,146 + -1.4
343,146 + -1.4
343,147 - -2.6
343,253 + +0.3
343,275 - -2.2
343,436 + BPHYT_RS01505 0.30 -1.0
343,437 - BPHYT_RS01505 0.30 -1.8
343,731 - BPHYT_RS01505 0.76 -1.6
343,862 + -1.6
343,862 + +1.0
343,862 + -2.7
343,862 + -1.6
343,862 + -0.4
343,863 - -1.3
343,957 + BPHYT_RS01510 0.16 -1.9
343,958 - BPHYT_RS01510 0.16 -1.0
343,976 + BPHYT_RS01510 0.20 -1.6
343,976 + BPHYT_RS01510 0.20 -0.8
343,976 + BPHYT_RS01510 0.20 -1.2
343,976 + BPHYT_RS01510 0.20 -1.0
343,977 - BPHYT_RS01510 0.20 -1.5
343,977 - BPHYT_RS01510 0.20 +0.2
343,977 - BPHYT_RS01510 0.20 -1.4
343,977 - BPHYT_RS01510 0.20 -0.3
343,977 - BPHYT_RS01510 0.20 -2.3
344,117 + BPHYT_RS01510 0.52 -0.0
344,117 + BPHYT_RS01510 0.52 -1.0
344,118 - BPHYT_RS01510 0.52 -1.7
344,118 - BPHYT_RS01510 0.52 -1.4
344,128 + BPHYT_RS01510 0.54 -1.9
344,129 - BPHYT_RS01510 0.54 -3.3
344,129 - BPHYT_RS01510 0.54 -3.0

Or see this region's nucleotide sequence